Table 2.
Conserved regions of LAAOs from Pseudoalteromonas microorganisms used for design of degenerate primers.
| Item | Accession no. | Sequences ofa | ||
|---|---|---|---|---|
| Region 1 | Region 2 | Region 3 | ||
| Pseudoalteromonas haloplanktis TAC125 | YP_339251 | 13IIGSGAAAGLS22 | 225AMAWRAGC232 | 359MTDFNGKTDL368 |
| Pseudoalteromonas tunicata D2 | ZP_01132853 | 13IIGSGAAAGLS22 | 224AMAWRAGC231 | 357MTDFNGKTDL366 |
| Pseudoalteromonas atlantica T6c | YP_662716 | 13IIGSGAAAGLS22 | 222AMAWRAGC230 | 359VTDFNAKTDL368 |
| Pseudoalteromonas sp. SM9913 | YP_004069407 | 13IIGSGAAAGLS22 | 225AMAWRAGC232 | 359MTDFNGKTDL368 |
| Degenerate primerb | ZZ-2: 5′-ATTATHGGYAGCGGCGC-3′ | ZZ-3: 5′-GCHATGGCDTGGCGTGC-3′ ZF-2: 5′-CCHGCACGCCAHGCCAT-3′ |
ZF-3: 5′-TDSCATTAAAGTCRGTC-3′ | |
aBoldface letters indicate the specific amino acids actually used in the design of the degenerate primers (forward primers: ZZ-2 and ZZ-3; reverse primers: ZF-2 and ZF-3).