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| WGS typing methods | Percentage of concordance | Time (Minutes per genome) | Reference basedmethod | Type of input | |
| 34 isolates | 47 isolates | ||||
| Pan-genome tree | 65 | 64 | 13 | Reference free | Contigs |
| K-mer tree | 88 | 89 | 5.2 | Reference free | Contigs |
| Nucleotide difference tree | 100 | 91 | 15 | Reference-based | Raw reads |
| SNP tree (raw reads) | 100 | 91 | 20 | Reference-based | Raw reads |
| SNP tree (contigs) | 100 | 89 | 5.5 | Reference-based | Contigs |
