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. Author manuscript; available in PMC: 2014 Dec 20.
Published in final edited form as: J Org Chem. 2013 Dec 11;78(24):12690–12702. doi: 10.1021/jo4022937

Table 3.

Discrimination of mismatched DNA targets by B4-series and reference ONs.a

ON Sequence B = DNA: 5′-GTG ABA TGC
Tm/°C
ΔTm/°C
T A C G
D2 3′-CAC TAT ACG 27.5 −17.0 −15.5 −9.0
W4 3′-CAC TWT ACG 27.5 −20.0 −17.0 −16.0
X4 3′-CAC TXT ACG 34.0 −16.5 −7.5 −17.0
Y4 3′-CAC TYT ACG 39.0 −21.0 −12.0 −17.0
Z4 3′-CAC TZT ACG 35.0 −21.5 −14.0 −14.5
a

For conditions of thermal denaturation experiments, see Table 1. Tm’s of fully matched duplexes are shown in bold. ΔTm = change in Tm relative to fully matched DNA:DNA duplex.