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. 2014 Feb 6;10(2):e1004122. doi: 10.1371/journal.pgen.1004122

Table 2. Transcription factor-disease relationships derived from shared modules.

Disease Transcription Factor (alt names) Significant Components TF-Module Odds Ratio TF-Module P-Value Disease genes in module/Total disease genes Relevant Literature Annotations (Pubmed ID) Literature Support of Association
Arrhythmogenic Right Ventricular Dysplasia ER-α (ESR1) 4 2.71 (2.09, 3.51) 3.1E-12 5/8 Atrial Fibrillation (19860128, 19860128) strong
Coronary Heart Disease (20153472)
Sudden cardiac death (21658281)
GR (NR3C1) 4 2.39 (1.84, 3.11) 1.03E-11 5/8 Coronary Heart Disease (19783104) weak
P300 4 1.75 (1.31, 2.37) 5.9E-05 5/8 Myocardial Infarction (21737953) weak
GATA3 4 2.02 (1.56, 2.63) 3.89E-08 5/8 Heart Development (18955134) weak
c-Jun (JNK) 4 1.74 (1.32, 2.31) 2.96E-05 5/8 Myocardial Infarction via K+ channel regulation (20518594) strong
Myocardial Infarction (21324895)
CEBPB 4 1.92 (1.34, 2.83) 0.000141 5/8 Chronic Heart Failure (12601168) weak
STAT3 4 2.41 (1.79, 3.27) 2.96E-10 5/8 Ventricular Arrhythmias and Contractile Dysfunction (22082679) strong
Atrial Fibrillation (18774104)
JunD 4 1.74 (1.29, 2.37) 0.00011 5/8 Cardiac hypertrophy and Heart failure (15655111) weak
Chronic Heart Disease (9136081)
STAT1 4 1.68 (1.29, 2.19) 9.01E-05 5/8 Atrial Fibrilation (18774104) strong
Long QT Syndrome (17490620)
Breast Cancer E2F6 2 2.29 (1.76, 2.98) 1.21E-10 62/608 Regulation of Tumor Suppressor (ARHI) in BC weak
13 1.67 (1.31, 2.13) 1.54E-05 26/608
46 1.75 (1.41, 2.18) 1.91E-07 28/608
CHD2 2 2.23 (1.72, 2.88) 6.7E-10 62/608 Mammary tumor modifier (17557176) strong
13 1.82 (1.43, 2.32) 8.28E-07 26/608 Gastric and Colorectal Cancer (21447119)
Colon Cancer Biomarker (17390049)
NFYA 2 2.78 (2.14, 3.60) 9.24E-15 62/608 E2F-1 Regulation (12697671) weak
Estrogen Regulation (15224348)
IRF1 2 2.34 (1.8, 3.05) 3.57E-11 62/608 Resistance to endocrine therapy in Breast Cancer Treatment (22295238) strong
46 2.91 (2.33, 3.65) 8.9E-23 28/608 Therapy resistant breast tumors (20457620)
Commonly mutated/rearranged in breast cancers (19697121, 17498560)
Differentially expression in breast tissue >(16241857)
HEY1 2 2.17 (1.63, 2.92) 1.7E-08 62/608 Target of Notch signaling (18469855) weak
13 2.5 (1.9, 3.33) 1.39E-12 26/608
46 2.2 (1.73, 2.81) 8.77E-12 28/608
E2F1 2 3.31 (2.53, 4.31) 8.36E-18 62/608 Tumor cell growth (22205655) strong
13 2.58 (1.99, 3.33) 1.27E-12 26/608 E2F1-dependent drug efficacy in breast cancer treatment (22185819, 20215421)
154 3.78 (2.62, 5.43) 1.61E-12 26/608 Breast cancer treatment (21573702, 21479363)
Prognostic breast cancer marker (21453498, 20410059)
Acquired Immunodeficiency Syndrome BATF 320 3.11 (2.24, 4.35) 4.23E-13 8/40 Inhibits T cell function in HIV (20890291) strong
NFKB 320 2.53 (1.77, 3.67) 3.04E-08 8/40 HIV use of NFKB pathway (11160127) strong
NFKB binds HIV TAR-RNA (22352910)
BCL11A 320 2.72 (1.99, 3.72) 2.02E-10 8/40 Represses HIV-1 gene transcription (15849318) weak
MEF2C 320 2.19 (1.55, 3.07) 8.2E-06 8/40 Misregulated in HIV-associated dementia (21170291) weak
IRF4 320 2.63 (1.92, 3.61) 4.01E-10 8/40 Regulates anti-HIV gene (21078663) strong
Expression associated in HIV-related lymphomas (11157493)
Thrombocytopenia p300 (CREBBP) 123 2.29 (1.5, 3.38) 8.9E-05 5/36 Polymorphisms in p300 associated with thrombocytopenia (18684867) strong
Fos 123 2.02 (1.47, 2.75) 1.03E-05 5/36 PDGF (c-Fos regulator) knockouts induce thrombocytopenia (12670444) weak
GATA1 123 1.87 (1.38, 2.53) 2.51E-05 5/36 GATA1 knockout mice develop thrombocytopenia (10216081) strong