Table 2.
Selected putative candidate genes annotated as transcription factors or with functions in development
| B. distachyon gene | Rice gene | Conserved protein domains [NCBI conserved domain id] | Top Arabidopsis BLASTP hit NCBI accession number and E value | Wheat orthologous (URGI contig ID) |
|---|---|---|---|---|
| Bradi4g39630 | Os12g13170 | B_zip[cd12193], basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins; MFMR[pfam07777], G-box binding protein MFMR | NP_850248.2; Basic region/leucine zipper transcription factor 16; E = 1e−120 | IWGSC_chr5DL_ab_k71_4513163 |
| Bradi4g40057 | Not Found | Zinc finger, PHD-type (IPR001965), Zinc finger, RING/FYVE/PHD-type | NP_200350; Enhanced downy mildew; E = 2e−63 | IWGSC_chr5DL_ab_k71_4518453 |
| Bradi4g40230 | Not colinear | DUF3594 super family [cl13583], RING super family [cl15348], RING-finger domain, specialized type of Zn-finger | XP_002875129.1; PHD finger family protein; E = 2e−89 | Not found |
| Bradi4g40250 | Os12g10660 | BBOX super family [cl00034], B-Box-type zinc finger; zinc binding domain (CHC3H2); 3.56e-04 | XP_002887747.1; zinc finger (B-box type) family protein; E = 3e−38 | IWGSC_chr6DS_ab_k71_2071445 |
| Bradi4g40270 | Os12g10630 | ZF-HD_dimer super family [cl04737]. homeo_ZF_HD super family[cl11752], homeobox domain, ZF-HD class | NP_172896.1; AtHB31; DNA binding/transcription factor (AtHB31); E = 3e−48 | Not found |
| Bradi4g40310 | Not colinear | zf-TRAF super family[cl08341], TRAF-type zinc finger | NP_187801.3; Prenyltransferase/zinc ion binding; E = 2e−84 | IWGSC_chr7DL_ab_k71_ 3381171 |
| Bradi4g40350 | Os12g10540 | MADS-box [cd00265] Type II subfamily of MADS. K-box super family [cl03234], K-box region | CAA16753.1; floral homeotic protein agamous; E = 2e−67 | IWGSC_chr5DS_ab_k71_2764238 (= TaAGL31 = DQ512349) |
| Bradi4g40357 | Os12g10520 | MADS-box [cd00265] Type II subfamily of MADS. K-box super family [cl03234], K-box region | AAC49085.1; MADS-box protein AGL12; E = 2e−47 | Not found |
| Bradi4g40540 | Os12g09250 | BRLZ[smart00338], basic region leucin zipper | XP_002888232; predicted protein; E = 1e−68 | IWGSC_chr5BS_ab_k71_2249326 (Pseudogene, not in 5AS & 5DS) |
| Bradi4g40517 | Os12g09590 | RRM_like_XS[cd12266], RNA recognition motif-like XS domain found in plants; zf-XS super family[cl04095], XS zinc finger domain | XP_002872063; hypothetical protein ARALYDRAFT_489218; E = 1e−167 | IWGSC_chr5DL_ab_k71_4509178 |
Only genes present in the regions of B. distachyon chromosome 4 and rice chromosome 12 regions colinear to the wheat VRN-D4 region are presented