Table 2.
The top ten gene ontology (GO) terms identified within four pairwise comparisons
| Comparison | Regulation | GO accession | GO term | n | % | p -value |
|---|---|---|---|---|---|---|
| MA-R4 xylose/glucose (C1) |
Up |
GO:0050896 |
Response to stimulus |
174 |
67.4 |
5.60E-06 |
| |
|
GO:0006950 |
Response to stress |
123 |
47.7 |
6.50E-05 |
| |
|
GO:0042221 |
Response to chemical stimulus |
95 |
36.8 |
1.36E-03 |
| |
|
GO:0016491 |
Oxidoreductase activity |
79 |
30.6 |
1.14E-06 |
| |
|
GO:0006091 |
Generation of precursor metabolites and energy |
57 |
22.1 |
4.38E-05 |
| |
Down |
GO:0044424 |
Intracellular part |
656 |
95.8 |
6.83E-04 |
| |
|
GO:0005737 |
Cytoplasm |
500 |
73.0 |
5.16E-06 |
| |
|
GO:0009987 |
Cellular process |
480 |
70.1 |
1.99E-06 |
| |
|
GO:0043229 |
Intracellular organelle |
410 |
59.9 |
5.18E-03 |
| |
|
GO:0008152 |
Metabolic process |
390 |
56.9 |
3.36E-09 |
| |
|
GO:0044237 |
Cellular metabolic process |
390 |
56.9 |
1.91E-10 |
| |
|
GO:0044238 |
Primary metabolic process |
374 |
54.6 |
3.26E-10 |
| |
|
GO:0043170 |
Macromolecule metabolic process |
321 |
46.9 |
1.52E-07 |
| |
|
GO:0043283 |
Biopolymer metabolic process |
321 |
46.9 |
7.22E-07 |
| |
|
GO:0006996 |
Organelle organization |
263 |
38.4 |
1.94E-08 |
| MA-B4 xylose/glucose (C2) |
Up |
GO:0042221 |
Response to chemical stimulus |
105 |
40.9 |
3.14E-08 |
| |
|
GO:0016491 |
Oxidoreductase activity |
93 |
36.2 |
2.78E-08 |
| |
|
GO:0005975 |
Carbohydrate metabolic process |
76 |
29.6 |
3.14E-08 |
| |
|
GO:0006091 |
Generation of precursor metabolites and energy |
61 |
23.7 |
4.64E-08 |
| |
Down |
GO:0044424 |
Intracellular part |
852 |
95.9 |
1.17E-13 |
| |
|
GO:0044464 |
Cell part |
611 |
68.8 |
6.56E-11 |
| |
|
GO:0009987 |
Cellular process |
611 |
68.8 |
4.06E-14 |
| |
|
GO:0005737 |
Cytoplasm |
609 |
68.6 |
6.14E-06 |
| |
|
GO:0043229 |
Intracellular organelle |
534 |
60.1 |
3.13E-05 |
| |
|
GO:0008152 |
Metabolic process |
474 |
53.4 |
2.14E-11 |
| |
|
GO:0044237 |
Cellular metabolic process |
474 |
53.4 |
8.13E-20 |
| |
|
GO:0044238 |
Primary metabolic process |
457 |
51.5 |
4.88E-12 |
| |
|
GO:0005634 |
Nucleus |
404 |
45.5 |
2.87E-03 |
| |
|
GO:0043170 |
Macromolecule metabolic process |
382 |
43.0 |
1.34E-07 |
| Xylose MA-R4/MA-B4 (C3) |
Up |
GO:0006520 |
Cellular amino acid metabolic process |
26 |
100 |
3.73E-04 |
| |
Down |
ND |
ND |
ND |
ND |
ND |
| Glucose MA-R4/MA-B4 (C4) |
Up |
GO:0016491 |
Oxidoreductase activity |
33 |
61.1 |
2.54E-05 |
| |
|
GO:0006629 |
Lipid metabolic process |
32 |
59.3 |
2.54E-05 |
| Down | ND | ND | ND | ND | ND |
Up- and down-regulated gene ontology (GO) terms identified within four comparisons C1-C4. n is the number of the genes with the specified function, % is the percentage of the genes in the comparison with the specified function, and p-value is the binomial distribution probability. If no significantly over-represented GO terms were found, this was indicated by “ND” for “not detected”.