Table 1. Gag and Pol HIV-1 proteins numbered in HXB2 genome.
Gene | Protein | ||||
HIV-1 proteins | Length (nucleotide) | Position (nucleotide) | Length (amino acid) | Position (amino acid) | |
Gag | P17 | 396 | 790–1185 | 132 | 263–394 |
P24 | 693 | 1186–1878 | 231 | 395–625 | |
P2 | 42 | 1879–1920 | 14 | 626–639 | |
P7 | 165 | 1921–2085 | 55 | 640–694 | |
P1 | 48 | 2086–2133 | 16 | 695–710 | |
P6 | 156 | 2134–2289 | 52 | 711–762 | |
Total | 1500 | 790–2289 | 500 | 263–762 | |
Pol | PR | 297 | 2253–2549 | 99 | 751–849 |
RTp51 | 1320 | 2550–3869 | 440 | 850–1289 | |
RTp66 | 360 | 3870–4229 | 120 | 1290–1409 | |
IN | 864 | 4230–5093 | 288 | 1410–1697 | |
Total | 2841 | 2253–5093 | 947 | 751–1697 |
Nucleotides and amino acids numbered according to HXB2 subtype B reference strain (GenBank accession number K03455). P17, matrix; P24, capsid; P2, spacer peptide 1; P7, nucleocapside; P1, space peptide 2; PR, protease; RT, retrotranscriptase; IN, integrase; TFP, transframe protein. Retrieved from http://www.hiv.lanl.gov/.