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Correct prediction ratios for training set by four methods for each of nine traits
| Predicted trait | |||||||||||
| Method | BRCA | COAD | HNSC | KIRC | LGG | OV | READ | UCEC | CEU | Total | Selected features |
| kNN/SNP | 3.0% | 40.9% | 54.5% | 10.6% | 13.6% | 68.2% | 19.7% | 22.7% | 100% | 37.0% | 236,107 |
| kNN/SNP-S | 48.5% | 45.5% | 83.3% | 45.5% | 78.8% | 75.8% | 78.8% | 37.9% | 100% | 66.0% | 16,333,627 |
| SVM/SNP | 53.0% | 50.0% | 78.8% | 68.2% | 86.4% | 36.4% | 42.4% | 62.1% | 100% | 64.1% | 9,838 |
| SVM/SNP-S | 47.0% | 16.7% | 59.1% | 47.0% | 56.1% | 47.0% | 34.8% | 51.5% | 100% | 51.0% | 1,597 |
