Table 1.
Primers sets, nucleotide sequences, amplicons, and the corresponding references that were used to screen for the viruses.
| Virus | Primer | Nucleotide sequence (5′-3′) | Amplicon (bp) | Reference |
|---|---|---|---|---|
| Parvovirus | PVF 1 | GGCCGTTAACGATATCACTCAAGTTTC | 561 | [18] |
| PVR 1 | AAAGCGCTTGCGGTGAAGTCTGGCGCT | |||
| Avian adenovirus group I | Hexon A | CAA RTT CAG RCA GAC GT | 897 | [17] |
| Hexon B | TAG TGA TGM CGS GAC ATC AT | |||
| IBV | UTR 41+ | ATGTCTATCGCCAGGGAAATGTC | 179 | [6] |
| UTR 31 | GGGCGTCCAAGTGCTGTACCC | |||
| UTR 11 | GCTCTAACTCTATACTAGCCTA | |||
| CAstV | CASpolIF | GAYACARBCGAATGCGRBAGRBTTG | 362 | [20] |
| CASpolIR | TCAGTGGAAGTGGGKCARBTCTAC | |||
| Reovirus | S4-F13 | GTGCGTGTTGGAGTTTCCCG | 1120 | [21] |
| S4-R1133 | TACGCCATCCTAGCTGGA | |||
| Rotavirus | F30 | GTGCGGAAAGATGGAGAAC | 630 | [22] |
| R660 | GTTGGGGTACCAGGGATTAA | |||
| ANV | Pol 1F | GYATGGGCGCYATCYATTTGAYAAC | 473 | [20] |
| Pol 1R | CRBTTTGCCCKCRBTARBTCTTTRBT |
AY: pyrimidine;BR: purine;CK: G ou T.