Table 3. Gene expressions of shorter or longer chain genes in Ssx_1972, a longer chain mutant, compared with SK36.
Locus | Gene | Product | Expression* | sd | Short† | Long† |
SSA_0222 | – | PTS system, mannose-specific IID component | 0.1210 | 0.0583 | Y | |
SSA_0393 | – | Bacteriocin ABC transporter permease/ATP-binding protein | 0.3499 | Y | ||
SSA_1907 | – | Hypothetical protein SSA_1907 | 0.3932 | 0.0167 | Y | |
SSA_2250 | – | Peptide ABC transporter permease | 0.4245 | 0.0125 | Y | |
SSA_0142 | – | Hypothetical protein SSA_0142 | 0.4440 | 0.1035 | Y | |
SSA_2077 | – | Hypothetical protein SSA_2077 | 0.4932 | 0.0512 | Y | |
SSA_0759 | argB | Acetylglutamate kinase | 3.1950 | 0.6376 | Y | |
SSA_0760 | – | Acetylornithine aminotransferase | 9.4869 | 4.9372 | Y | |
SSA_1715 | serC | Phosphoserine aminotransferase | 2.0630 | 1.0319 | Y | |
SSA_1897 | – | Hypothetical protein SSA_1897 | 2.2604 | 0.6261 | Y | |
SSA_2117 | rmuC | DNA recombination protein RmuC | 2.5179 | 0.7197 | Y | |
SSA_2141 | argH | Argininosuccinate lyase | 4.6751 | 3.6790 | Y | |
SSA_2159 | – | Hypothetical protein SSA_2159 | 4.6105 | 1.8498 | Y | |
SSA_2337 | – | Hypothetical protein SSA_2337 | 2.0824 | 0.5594 | Y | |
SSA_0724 | – | Multidrug ABC transporter ATPase/permease | 0.3345 | Y | ||
SSA_0209 | pepA | Glutamyl aminopeptidase | 0.4287 | 0.0893 | Y | |
SSA_0737 | sagP | Arginine deiminase | 0.4317 | 0.1570 | Y | |
SSA_0588 | – | l-Cystine ABC transporter, substrate-binding component | 0.4475 | 0.1851 | Y | |
SSA_1284 | – | Hypothetical protein SSA_1284 | 0.4670 | Y | ||
SSA_1275 | – | Hypothetical protein SSA_1275 | 0.4830 | 0.2878 | Y | |
SSA_0531 | eutQ | Ethanolamine utilization protein EutQ | 0.4985 | 0.4339 | Y |
Relative expression in Ssx_1972 compared with SK36 using microarray analysis.
Y, Yes.