Table 2.
The top 10 most abundant 5′-isomiRs in human skin
miRNA family | Seed | Arm | Ranka | No. of 5′-isomiR reads | Arm abundance |
---|---|---|---|---|---|
hsa-miR-203 | GAAAUGU | 3p | 8 | 8,774,451 | 45.5 |
hsa-miR-140 | CCACAGG | 3p | 37 | 1,072,944 | 39.5 |
hsa-miR-126 | GUACCGU | 3p | 54 | 776,502 | 13.8 |
hsa-miR-199b | ACAGUAG | 3p | 55 | 724,009 | 27.0 |
hsa-miR-101 | UACAGUA | 3p | 57 | 662,855 | 27.3 |
hsa-miR-10a | CCCUGUA | 5p | 59 | 661,921 | 22.7 |
hsa-miR-143 | UGAGAUG | 3p | 69 | 619,911 | 1.8 |
hsa-miR-378a | UGGACUU | 3p | 71 | 402,197 | 6.0 |
hsa-miR-29a | UAGCACC | 3p | 77 | 334,605 | 18.1 |
hsa-let-7a | AGGUAGU | 5p | 89 | 269,329 | 0.6 |
The arm abundance of a 5′-isomiR is the percentage of all reads mapped to one arm that represents the 5′-isomiR. Seed region represents the range from 2 nt to 8 nt of a 5′-isomiR sequence.
aRank of the 5′-isomiR among all miRNAs including major miRNAs, determined by the number of sequencing reads.