Table 5.
Predicted gene targets of miRNA in P. aphrodite
| miRNA family | Targets predicted by method 1 | Targets predicted by method 2 | Targets in Arabidopsis |
|---|---|---|---|
| miR156/157 | PATC133938,PATC012624,PATC136943,PATC024123,PATC042847,PATC149565,PATC130083,PATC144388,PATC147320,PATC134878,PATC141616,PATC161070,PATC135103,PATC049704,PATC136866,PATC135707*,PATC153064*,PATC143407*,PATC148826*,PATC141751* | PATC231283,PATC232246,PATC203938,PATC229081,PATC136640,PATC133464,PATC198877,PATC135707*,PATC153064*,PATC143407*,PATC141751*,PATC148826* | AT5G50570.2,AT3G15270.1,AT5G43270.1,AT5G43270.3,AT2G42200.1,AT5G50670.1 |
| miR158 | N/A | PATC029643,PATC022855 | AT3G03580.1 |
| miR159 | PATC139252,PATC127723,PATC156552,PATC146639,PATC143380,PATC128406,PATC131148,PATC128474,PATC089381,PATC145355,PATC007115,PATC155837,PATC023828,PATC224753,PATC148783* | PATC128977,PATC137824,PATC072039,PATC148783* | AT3G11440.1,AT2G32460.1,AT5G06100.3,AT5G55020.1 |
| miR160 | PATC088662,PATC134082*,PATC136630* | PATC130364,PATC134082*,PATC136630* | AT4G30080.1 |
| miR162 | PATC147200,PATC135020 | PATC140870 | AT1G01040.1 |
| miR164 | PATC132261,PATC133411, PATC088390,PATC152024*,PATC132958*,PATC155244* | PATC142438,PATC124714,PATC152024*,PATC132958*,PATC155244* | AT3G12977.1,AT5G61430.1,AT1G56010.2 |
| miR165/166 | PATC115701,PATC152414*,PATC129561*,PATC144912*,PATC146998* | PATC123294,PATC129561*,PATC152414*,PATC144912*,PATC146998* | AT2G34710.1,AT4G32880.1 |
| miR167 | PATC137831,PATC142408,PATC139566,PATC141313,PATC022536 | PATC134326,PATC140885 | AT1G30330.2,AT1G30330.1 |
| miR168 | PATC143303* | PATC157237,PATC157394,PATC202515,PATC093469,PATC213155,PATC155439,PATC129162,PATC143303* | AT1G48410.2,AT1G48410.1,AT1G48410.3 |
| miR169 | N/A | PATC129283,PATC126444,PATC150676 | AT5G06510.2,AT1G54160.1 |
| miR170/171 | PATC049290,PATC154363,PATC023657,PATC124992,PATC143284*,PATC149190*,PATC149532* | PATC144573,PATC130737,PATC143284*,PATC149190*,PATC149532* | AT4G00150.1 |
| miR172 | PATC148983,PATC233147,PATC133311*,PATC135984*,PATC124448* | PATC147704,PATC133311*,PATC135984*,PATC124448* | AT4G36920.2,AT2G28550.3,AT4G36920.1,AT2G28550.2 |
| miR319 | PATC139252,PATC125994,PATC148783,PATC007115,PATC129076,PATC023828,PATC131148,PATC128474,PATC089381 | PATC129038,PATC135086,PATC133065,PATC134871,PATC136074,PATC138402,PATC038597 | AT1G30210.1,AT3G15030.3,AT4G18390.2,AT1G30210.2,AT1G53230.1 |
| miR393 | PATC157696*,PATC149677* | PATC157696*,PATC149677* | AT3G62980.1 |
| miR394 | PATC129841* | PATC129841* | AT1G27340.1 |
| miR395 | PATC147276* | PATC126179,PATC147276* | AT4G14680.1 |
| miR396 | PATC131246,PATC125749,PATC125758,PATC129482,PATC152055,PATC150890,PATC129416,PATC151850,PATC149114,PATC127048,PATC137791,PATC149117,PATC130150,PATC076655,PATC144370 | PATC130257,PATC144187,PATC150161,PATC133318 | AT4G37740.1,AT2G22840.1,AT2G36400.1 |
| miR397 | N/A | PATC145076,PATC125841,PATC132212,PATC124360,PATC130366,PATC140962 | AT5G60020.1,AT2G38080.1,AT2G29130.1 |
| miR398 | N/A | PATC143343,PATC152430,PATC143977 | AT3G15640.2,AT2G28190.1 |
| miR399 | PATC145005,PATC143740* | PATC143740* | AT2G33770.1 |
| miR408 | PATC128673,PATC149690 | PATC113957,PATC146846,PATC003794 | AT2G02850.1,AT2G30210.1 |
| miR528 | PATC156396,PATC127027 | N/A | N/A |
| miR529 | PATC143407,PATC134878,PATC135103,PATC153064,PATC148826 | N/A | N/A |
| miR535 | PATC128688,PATC135523,PATC138531,PATC152377,PATC134561,PATC130349,PATC129893,PATC154063,PATC151754,PATC127615,PATC138376,PATC127350,PATC157118,PATC142441,PATC128040,PATC126341,PATC138729,PATC147167,PATC133246,PATC145620,PATC130662,PATC146667 | N/A | N/A |
| miR774 | PATC126979 | N/A | N/A |
| miR779 | N/A | PATC000784,PATC172415,PATC137533,PATC024708,PATC025304,PATC167710,PATC128352 | AT5G53890.1 |
| miR783 | PATC205714,PATC125598 | N/A | N/A |
| miR827 | N/A | PATC132672 | AT1G02860.1 |
| miR844 | N/A | PATC208749 | AT5G51270.1 |
| miR845 | PATC132451 | N/A | N/A |
| miR858 | N/A | PATC041804,PATC124665,PATC129048 | AT2G47460.1,AT3G08500.1 |
| miR1061 | PATC152227 | N/A | N/A |
| miR1318 | PATC124801,PATC148138 | N/A | N/A |
| miR2628 | PATC145891 | N/A | N/A |
| miR2950 | PATC127350 | N/A | N/A |
| miR4384 | PATC141931 | N/A | N/A |
| miR4413 | PATC038751 | N/A | N/A |
| miR5021 | PATC140350,PATC124700,PATC125225,PATC151681,PATC130999,PATC124610,PATC150529,PATC069316,PATC155090,PATC126852,PATC127170,PATC150919,PATC140968,PATC137680,PATC155795,PATC092129,PATC152249,PATC125628,PATC123011 | N/A | N/A |
| miR5139 | PATC143291,PATC156350,PATC157217,PATC139307,PATC022793,PATC158299,PATC236030 | N/A | N/A |
| miR5204 | PATC126586 | N/A | N/A |
| miR5253 | PATC138734,PATC048488 | N/A | N/A |
| miR5658 | PATC139976,PATC124238 | N/A | N/A |
| miR5661 | PATC028326 | N/A | N/A |