Table 2.

Representatives of Publications that Have Had Fish Transcriptomes Studied by RNA-Seq

Major application	Fish species	Sequecing platform	Reference
Transcriptome mapping and genome annotation	Poecilia reticulate	Roche 454	Fraser et al., 2011
	Danio rerio	Illumina	Collins et al., 2012
	Ictalurus punctatus	Illumina	Liu et al., 2012b
	Nothobranchius furzeri	Illumina	Petzold et al., 2013
Novel transcript discovery	Labeo rohita, Hamilton	Illumina	Robinson et al., 2012
	Danio rerio	Illumina	Pauli et al., 2012
	Oncorhynchus mykiss	Illumina	Palstra et al., 2013
	Salmo salar	Illumina	Kure et al., 2013
Detection of RNA splicing	Danio rerio	AB SOLiD	Aanes et al., 2011;
SNP discovery	Ictalurus furcatus	Illumina	Liu et al., 2011
	Cyprinus carpio	Illumina	Xu et al., 2012
	Oncorhynchus mykiss	Illumina	Salem et al., 2012
Quantification of gene expression	Danio rerio	AB SOLiD	Vesterlund et al., 2011
	Lates calcarifer	Roche 454	Xia et al., 2013
	Lateolabrax japonicus	Illumina	Xiang et al., 2010
	Fundulus heteroclitus	Roche 454	Oleksiak et al., 2011
	Salmo trutta	Illumina	Uren Webster et al., 2013
	Fundulus grandis	Illumina	Garcia et al., 2012
	Perca flavescens	Roche 454	Pierron et al., 2011
	Melanotaenia duboulayi	Illumina	Smith et al., 2013
	Coregonus clupeaformis spp., Salmonidae	Roche 454	Jeukens et al., 2010
	Gasterosteus aculeatus	Illumina	Greenwood et al., 2012
	Astyanax mexicanus	Roche 454	Gross et al., 2013