Table 1.
Results (threshold cycle values) of real-time PCR obtained from suspected clinical samples
|
Identification number |
Nasal swab |
Ocular swab |
Rectal swab |
Blood |
Crusted scab |
Lung nodule |
|---|---|---|---|---|---|---|
| |
TaqMan assay |
TaqMan assay |
TaqMan assay |
TaqMan assay |
TaqMan assay |
TaqMan assay |
| (Ct value) | (Ct value) | (Ct value) | (Ct value) | (Ct value) | (Ct value) | |
| 1 (outbreak n° 1) |
25,93 |
25,97 |
30,83 |
36,2 |
19,88 |
- |
| 2 (outbreak n° 1) |
27,57 |
27,8 |
32,77 |
38 |
22,88 |
- |
| 3 (outbreak n° 1) |
29,12 |
31,08 |
28,32 |
37,6 |
- |
- |
| 4 (outbreak n° 1) |
30,28 |
30,83 |
40,03 |
30,75 |
- |
- |
| 5 (outbreak n° 1) |
31,97 |
32,8 |
35 |
39,87 |
19,59 |
- |
| 6 (outbreak n° 1) |
38,33 |
26,07 |
38,93 |
37,78 |
- |
- |
| 7 (outbreak n° 1) |
25,82 |
39,75 |
33,6 |
33,42 |
- |
- |
| 8 (outbreak n° 1) |
No Ct |
42,5 |
No Ct |
- |
- |
18,7 |
| 9 (outbreak n° 1) |
39,93 |
No Ct |
39,21 |
37,1 |
- |
- |
| 10 (outbreak n° 1) |
38,3 |
22,97 |
30,32 |
37,8 |
- |
- |
| 11 (outbreak n° 1) |
24,03 |
24,5 |
37,17 |
40,93 |
20,98 |
- |
| 12 (outbreak n° 1) |
21,56 |
35,95 |
No Ct |
- |
- |
17,95 |
| 13 (outbreak n° 2) |
35,07 |
33,25 |
38,78 |
41,1 |
- |
- |
| 14 (outbreak n° 2) |
29,8 |
28,83 |
No Ct |
36,5 |
- |
- |
| 15 (outbreak n° 2) |
30,69 |
34,64 |
42,5 |
30,29 |
- |
- |
| 16 (outbreak n° 3) |
36,64 |
31,21 |
35,6 |
No Ct |
- |
- |
| 17 (outbreak n° 3) |
34 |
29,86 |
36,04 |
No Ct |
- |
- |
| 18 (outbreak n° 3) |
29,7 |
33,5 |
38,75 |
- |
- |
19,93 |
| 19 (outbreak n° 3) |
34,2 |
33,93 |
34,93 |
40,75 |
- |
- |
| 20 (outbreak n° 3) |
33,92 |
36,33 |
38,2 |
36,4 |
- |
|
| 21 (outbreak n° 4) |
35,07 |
37,9 |
39,5 |
33,96 |
- |
|
| 22 (outbreak n° 4) |
40,48 |
40,16 |
41,1 |
- |
- |
20,37 |
| 23 (outbreak n° 4) |
41,7 |
35,87 |
35,1 |
No Ct |
- |
- |
| 24 (outbreak n° 4) |
40,16 |
35,83 |
34,83 |
38,04 |
- |
- |
| 25 (outbreak n° 4) |
35,66 |
33,3 |
39,5 |
35,86 |
- |
- |
| 26 (outbreak n° 5) |
No Ct |
33,95 |
35,32 |
No Ct |
- |
- |
| 27 (outbreak n° 5) |
37,5 |
31,39 |
40,3 |
40,68 |
- |
- |
| 28 (outbreak n° 5) |
33,96 |
30,42 |
39,5 |
- |
- |
22,94 |
| 29 (outbreak n° 6) |
27,5 |
27,5 |
38 |
No Ct |
- |
- |
| 30 (outbreak n° 6) |
40 |
27,18 |
39,5 |
40,67 |
- |
- |
| 31 (outbreak n° 6) |
24,58 |
22,28 |
38 |
No Ct |
- |
- |
| 32 (outbreak n° 6) |
19,39 |
26,8 |
29,89 |
39,48 |
- |
- |
| 33 (outbreak n° 7) | 28,79 | 22 | 26,62 | 33,84 | - | - |
-° : sampling unrealized.