Table 2.
Sequenced genomes with most hits to the mangrove metagenomes
|
RJ Mangrove | ||||||||
|---|---|---|---|---|---|---|---|---|
| Genome | Kingdom/Group | Gram Strain | Oxygen requeriment | Motility | Pathogenic | Habitat | Salinity | Number of reads |
|
Syntrophobacter fumaroxidans MPOB |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
No |
Aquatic |
|
1,339 |
|
Desulfatibacillum alkenivorans AK-01 |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
No |
Aquatic |
|
1,007 |
|
Syntrophus aciditrophicus SB |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
|
Multiple |
|
584 |
|
Thioalkalivibrio sulfidophilus HL-EbGr7 |
Bacteria/Gammaproteobacteria |
Negative |
Aerobic |
Yes |
No |
Specialized |
Moderate halophilic |
472 |
|
Roseiflexus sp. RS-1 |
Bacteria/Chloroflexi |
Negative |
Facultative |
Yes |
|
Specialized |
|
421 |
|
Gemmatimonas aurantiaca T-27 |
Bacteria |
Negative |
Aerobic |
Yes |
No |
|
|
374 |
|
Opitutus terrae PB90-1 |
Bacteria |
|
Anaerobic |
Yes |
No |
Aquatic |
|
290 |
|
Thermomicrobium roseum DSM 5159 |
Bacteria/Chloroflexi |
Negative |
Aerobic |
No |
No |
Specialized |
|
224 |
|
Geobacter uraniireducens Rf4 |
Bacteria/Deltaproteobacteria |
Negative |
Microaerophilic |
|
|
Multiple |
|
222 |
|
Thiobacillus denitrificans ATCC 25259 |
Bacteria/Betaproteobacteria |
Negative |
Facultative |
Yes |
No |
Multiple |
|
214 |
|
Methanosarcina acetivorans C2A |
Archaea/Euryarchaeota |
|
Anaerobic |
No |
No |
Aquatic |
|
179 |
|
Methanoculleus marisnigri JR1 |
Archaea/Euryarchaeota |
Negative |
Anaerobic |
Yes |
No |
Aquatic |
|
170 |
| BA Mangrove | ||||||||
| Genome |
Kingdom/Group |
Gram Strain |
Oxygen requeriment |
Motility |
Pathogenic |
Habitat |
Salinity |
Number of reads |
|
Thiobacillus denitrificans ATCC 25259 |
Bacteria/Betaproteobacteria |
Negative |
Facultative |
Yes |
No |
Multiple |
|
984 |
|
Syntrophobacter fumaroxidans MPOB |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
No |
Aquatic |
|
911 |
|
Desulfatibacillum alkenivorans AK-01 |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
No |
Aquatic |
|
771 |
|
Syntrophus aciditrophicus SB |
Bacteria/Deltaproteobacteria |
Negative |
Anaerobic |
No |
|
Multiple |
|
492 |
|
Gemmatimonas aurantiaca T-27 |
Bacteria |
Negative |
Aerobic |
Yes |
No |
|
|
326 |
|
Opitutus terrae PB90-1 |
Bacteria |
Negative |
Anaerobic |
Yes |
No |
Aquatic |
|
250 |
|
Geobacter uraniireducens Rf4 |
Bacteria/Deltaproteobacteria |
Negative |
Microaerophilic |
|
|
Multiple |
|
230 |
|
Roseiflexus sp. RS-1 |
Bacteria/Chloroflexi |
Negative |
Facultative |
Yes |
|
Specialized |
|
220 |
|
Rubrobacter xylanophilus DSM 9941 |
Bacteria/Actinobacteria |
Positive |
Aerobic |
No |
No |
Specialized |
|
211 |
|
Nocardioides sp. JS614 |
Bacteria/Actinobacteria |
Positive |
Aerobic |
No |
No |
Terrestrial |
|
157 |
| Thioalkalivibrio sulfidophilus HL-EbGr7 | Bacteria/Gammaproteobacteria | Negative | Aerobic | Yes | No | Specialized | 151 | |