. Author manuscript; available in PMC: 2014 Feb 13.

Published in final edited form as: Nat Biotechnol. 2011 Nov 20;29(12):1103–1108. doi: 10.1038/nbt.2030

Table 1.

Summary of the data sets used in this study

Feature	Cell type	Data sets
Somatic copy number alterations in cancer	Multiple cancer types	Ref. 1
Somatic copy number alterations in cancer	Glioblastoma	TCGA glioblastoma project¹⁷
	Ovarian cancer	TCGA ovarian cancer project¹⁸
Long-range DNA interactions	Two tissue types	Ref. 6
DNA replication timing	Multiple cell types	Ref. 4
	Lymphoblastoid cell line	Ref. 5
Cancer genes	Multiple cancer types	Cancer Gene Census project¹⁶