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. 2014 Feb 13;10(2):e1003470. doi: 10.1371/journal.pcbi.1003470

Table 1. The distribution of oncogenic mutations and SNPs on PDB structures of target proteins in IL-1 pathway.

Protein PDB Code COSMIC COSMIC Surface LS-SNP LS-SNP Surface Total Residues Surface Residues
ATF2, CREB 1t2kD 1 0 1 1 61 61
ATF2, CREB 4h36B 0 0 0 0 8 8
c-Fos, FOS 1fosE 4 4 2 2 60 60
c-Jun, JUN 1jnmA, 1fosF 4 4 1 1 57 57
c-Myc, MYC 1nkpA 8 7 0 0 88 81
ELK1 1duxC 7 5 0 0 88 61
ERK1, MAPK3 2zoqA 14 10 11 9 351 209
ERK2,MAPK2 1wzyA, 3teiA, 4fv4A, 4fv7A, 1tvoA, 4fv0A, 2y9qA 26 17 3 3 365 199
histone H3.3 4hgaB 0 0 6 6 93 85
HSP27 3q9qA 2 1 9 9 79 67
NFKBIA 1nfiE, 1iknD 0 0 8 6 215 142
NFKBIB 1oy3D 0 0 0 0 220 130
IKBKA, CHUK, IKBKB 3brtA, 3brvA 0 0 8 8 39 39
IKBKG 3brvB, 3brtB 0 0 1 1 62 61
IL1A 2l5xA 6 3 11 8 151 102
IL1R1 4depB 18 13 29 21 296 216
IL1RAP 4depC 16 13 14 9 288 201
IRAK2 3mopK 3 1 11 5 93 65
IRAK4 3mopG 2 2 7 5 107 76
IRF7 2o61A 0 0 0 0 498 351
JNK1, MAPK8 3o17A, 1ukhA, 3eljA 30 18 8 7 366 213
JNK2, MAPK9 3e7oA, 3npcA 30 18 9 8 357 211
JNK3 3fv8A, 2zduA, 2r9sA, 4h36 2 1 8 4 356 203
MAPKAPK2 2jboA, 2onlC 22 16 13 11 317 211
MAPK14 1kv1A, 2bajA, 3odyX, 3queA, 1w82A, 2y8oA, 2onlA 0 0 30 24 351 211
MAPK11 3gc9A, 3gp0A, 3gc8A 0 0 26 21 347 213
MEKK3, MAP3K3 2pphA, 2jrhA, 2c60A 6 4 3 3 93 76
MKK1, MAP2K1 2p55A 31 17 6 6 289 181
MKK2, MAP2K2 1s9iA 17 12 12 10 303 182
MKK4, MAP2K4 3aloA, 3alnA, 3vutA 56 40 6 4 289 190
MKK6, MAP2K6 3vn9A, 3fmeA 25 19 7 6 291 174
MKK6, MAP2K6 2y8oB 0 0 0 0 8 8
MKK7, MAP2K7 2dylA 29 22 6 3 272 172
MNK1, MKNK1 2hw6A 0 0 16 10 242 145
MNK1, MKNK1 2y9qB 0 0 0 0 17 17
MNK2, MKNK2 2ac3A 0 0 9 7 277 191
MSK1, RPS6KA5 3kn5A, 3kn6A 23 12 14 10 282 174
MSK1, RPS6KA5 1vzoA 20 14 15 12 324 188
MYD88 2js7A, 2z5vA 22 14 0 0 160 106
MYD88 3mopA 7 7 0 0 105 74
NF-kBp105 3gutB 0 0 9 7 312 198
NFKB1 1svcP, 1nfiB 0 0 8 6 311 198
NFKB3, RELA 1nfiA, 3gutA 0 0 12 11 295 208
NIK, MAP3K14 4g3dA, 4dn5A 14 7 5 4 331 194
TAB1 2j4oA 25 18 21 16 355 207
TAK1 2yiyA, 2evaA 21 15 8 4 295 181
TOLLIP 1wglA 3 3 5 3 59 51
TRAF6 1lb4A, 1lb5A, 1lb6A, 12 11 3 2 155 112
TRAF6 3hcsA, 3hctA, 2eciA 13 11 9 7 157 119
IL1B 4depA 16 12 4 2 151 100
IL1R1 (model) - 0 0 0 0 157 106
IL1RAP (model) - 0 0 0 0 145 96
TOTAL 535 371 394 302 10988 7181