Table 3.
List of up-regulated genes observed for the T0R_T0S interaction with respective annotation and fold-change values
| Name | Blast Sol network genomics | e-value | Annotation* | Fold change (T0R X T0S) |
|---|---|---|---|---|
| 0U1 |
SGN-E628893 |
0 |
---NA--- |
1000,27 |
| 0U2 |
SGN-E1352064 |
5e-89 |
Caffeine synthase |
642,35 |
| 0U3 |
SGN-E1326397 |
0 |
Acidic endochitinase se2 |
447,45 |
| 0U4 |
SGN-E1310344 |
0 |
Metallothionein-like protein |
280,91 |
| 0U5 |
SGN-E1334735 |
0 |
Kunitz trypsin inhibitor |
238,17 |
| 0U6 |
SGN-E1316291 |
0 |
Acid phosphatase |
236,53 |
| 0U7 |
SGN-E661231 |
1e-175 |
Polygalacturonase-1 non-catalytic subunit beta |
236,37 |
| 0U8 |
SGN-E1327615 |
0 |
Kunitz trypsin inhibitor |
168,12 |
| 0U9 |
SGN-E1337775 |
0 |
Organ-specific protein |
155,92 |
| 0U10 |
SGN-E659257 |
0 |
Polygalacturonase-1 non-catalytic subunit beta |
152,17 |
| 0U11 |
SGN-E1352070 |
0 |
Caffeine synthase |
148,75 |
| 0U12 |
SGN-E642649 |
0 |
Cytokinin oxidase |
143,25 |
| 0U13 |
SGN-E833713 |
1e-146 |
Asr1 protein |
119,38 |
| 0U14 |
SGN-E667484 |
0 |
Protein |
115,77 |
| 0U15 |
SGN-E1319644 |
0 |
pr-10 type pathogenesis-related protein |
98,14 |
| 0U16 |
NM** |
|
Protein |
97,12 |
| 0U17 |
NM |
|
Protein |
94,57 |
| 0U18 |
SGN-E1321440 |
0 |
Acid phosphatase |
93,94 |
| 0U19 |
NM |
|
Invertase pectin methylesterase inhibitor family protein |
82,40 |
| 0U20 |
SGN-E1312621 |
0 |
---NA--- |
76,83 |
| 0U21 |
SGN-E1309331 |
0 |
mpbq msbq methyltransferase 2 |
75,15 |
| 0U22 |
SGN-E837532 |
2e-31 |
Class iii chitinase |
75,05 |
| 0U23 |
SGN-E1316252 |
0 |
Heat shock |
73,55 |
| 0U24 |
SGN-E1325880 |
0 |
Swib complex baf60b domain-containing protein |
72,42 |
| 0U25 |
SGN-E832873 |
1e-119 |
Kunitz trypsin inhibitor |
63,26 |
| 0U26 |
SGN-E1322100 |
1e-73 |
Polyphenol oxidase |
60,83 |
| 0U27 |
SGN-E660241 |
0 |
Polyphenol oxidase |
57,50 |
| 0U28 |
SGN-E671322 |
0 |
60s acidic ribosomal protein p0 |
56,95 |
| 0U29 |
SGN-E1128614 |
8e-11 |
Protein |
53,42 |
| 0U30 |
SGN-E682004 |
0 |
Lipid transfer protein |
50,27 |
| 0U31 |
SGN-E1334549 |
0 |
Type ii proteinase inhibitor family protein |
49,57 |
| 0U32 |
SGN-E1337715 |
0 |
Protein |
49,57 |
| 0U33 |
SGN-E640935 |
0 |
Class iii chitinase |
48,21 |
| 0U34 |
SGN-E990795 |
7e-16 |
Microsomal glutathione s- |
47,84 |
| 0U35 |
SGN-E668445 |
0 |
Serine-type endopeptidase inhibitor |
47,81 |
| 0U36 |
NM |
|
Metallothionein-like protein |
47,79 |
| 0U37 |
NM |
|
Polyphenol oxidase |
46,30 |
| 0U38 |
SGN-E640935 |
0 |
Class iii chitinase |
45,63 |
| 0U39 |
SGN-E657601 |
0 |
Protein |
44,71 |
| 0U40 |
SGN-E835025 |
|
4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
44,21 |
| 0U41 |
SGN-E1320197 |
0 |
Peroxisomal membrane |
43,89 |
| 0U42 |
SGN-E636199 |
0 |
---NA--- |
43,72 |
| 0U43 |
SGN-E1333755 |
0 |
Type ii proteinase inhibitor family protein |
41,88 |
| 0U44 |
SGN-E1337775 |
0 |
Organ-specific protein |
41,68 |
| 0U45 |
SGN-E912118 |
1e-23 |
Tartrate-resistant acid phosphatase type 5 |
41,04 |
| 0U46 |
SGN-E628829 |
8e-94 |
Cell wall protein |
40,77 |
| 0U47 |
SGN-E449176 |
|
Phospholipid glycerol acyltransferase family protein 7 |
39,90 |
| 0U48 |
SGN-E830846 |
0 |
r3h domain containing |
39,64 |
| 0U49 |
SGN-E628829 |
8e-94 |
Oxygen-evolving enhancer protein chloroplast |
39,55 |
| 0U50 |
NM |
|
Auxin-independent growth promoter protein |
39,13 |
| 0U51 |
SGN-E1349312 |
0 |
Lipid transfer protein |
39,09 |
| 0U52 |
SGN-E639273 |
1e-160 |
Protein kinase domain containing expressed |
38,61 |
| 0U53 |
SGN-E1352095 |
0 |
Protein |
35,83 |
| 0U54 |
SGN-E838896 |
0 |
Cytochrome p450 |
34,98 |
| 0U55 |
NM |
|
nadh dehydrogenase subunit f |
34,83 |
| 0U56 |
SGN-E838821 |
0 |
mta sah |
34,62 |
| 0U57 |
SGN-E669832 |
0 |
Cytokinin oxidase |
33,83 |
| 0U58 |
SGN-E643214 |
0 |
vesicle-associated membrane protein 714 |
33,06 |
| 0U59 |
SGN-E1346029 |
0 |
Protein |
32,83 |
| 0U60 |
SGN-E1348577 |
0 |
Protein |
32,50 |
| 0U61 |
SGN-E674849 |
1e-15 |
Mitochondrial chaperonin hsp60 |
32,40 |
| 0U62 |
SGN-E788243 |
6e-20 |
Tartrate-resistant acid phosphatase type 5 |
32,40 |
| 0U63 |
SGN-E109388 |
3e-31 |
Protein |
31,93 |
| 0U64 |
SGN-E1326628 |
0 |
Formate dehydrogenase |
31,83 |
| 0U65 |
SGN-E1333903 |
0 |
Elongation factor-1 alpha |
31,16 |
| 0U66 |
NM |
|
Protein |
30,56 |
| 0U67 |
SGN-E1321812 |
0 |
Peptidylprolyl isomerase |
30,27 |
| 0U68 |
SGN-E1310338 |
0 |
60s ribosomal protein |
30,00 |
| 0U69 |
NM |
|
Conserved hypothetical protein [Ricinus communis] |
29,87 |
| 0U70 |
SGN-E681444 |
0 |
Homeobox-leucine zipper protein |
29,71 |
| 0U71 |
SGN-E1168096 |
2e-20 |
Protein |
29,31 |
| 0U72 |
SGN-E818914 |
2e-36 |
Gibberellin 20 |
29,19 |
| 0U73 |
SGN-E431715 |
7e-11 |
Cellulose synthase |
28,99 |
| 0U74 |
SGN-E650445 |
0 |
Poly -binding protein |
28,29 |
| 0U75 |
SGN-E631106 |
3e-19 |
orf i polyprotein |
28,09 |
| 0U76 |
SGN-E1314273 |
0 |
Ankyrin repeat domain |
27,84 |
| 0U77 |
SGN-E1315499 |
9e-23 |
Atapy2 atpase nucleotide diphosphatase |
27,54 |
| 0U78 |
SGN-E1315958 |
0 |
nadh ubiquinone oxidoreductase b14 subunit |
26,38 |
| 0U79 |
SGN-E830665 |
0 |
sec61 transport protein |
25,52 |
| 0U80 |
SGN-E1316141 |
0 |
Flavanone 3-hydroxylase-like protein |
24,98 |
| 0U81 |
NM |
|
cbl-interacting serine threonine-protein |
24,92 |
| 0U82 |
SGN-E1342733 |
0 |
Transcription factor lim |
24,70 |
| 0U83 |
SGN-E837532 |
8e-30 |
Class iii chitinase |
23,94 |
| 0U84 |
SGN-E1322208 |
5e-90 |
Cysteine proteinase |
23,93 |
| 0U85 |
SGN-E1322866 |
1e-126 |
Protein |
23,85 |
| 0U86 |
SGN-E1315443 |
0 |
Acid phosphatase |
23,69 |
| 0U87 |
SGN-E662706 |
0 |
gdsl-motif lipase hydrolase family protein |
23,27 |
| 0U88 |
SGN-E266690 |
7e-11 |
Protein |
23,16 |
| 0U89 |
SGN-E1319812 |
0 |
Protein |
22,87 |
| 0U90 |
SGN-E1334410 |
0 |
Protein |
22,82 |
| 0U91 |
SGN-E1321222 |
0 |
Triosephosphate isomerase |
22,62 |
| 0U92 |
SGN-E648331 |
1e-68 |
Serine-threonine protein plant- |
22,61 |
| 0U93 |
SGN-E1351186 |
0 |
Class iii chitinase |
22,36 |
| 0U94 |
SGN-E951741 |
2e-22 |
Late embryogenesis abundant protein lea14- |
22,06 |
| 0U95 |
SGN-E686943 |
0 |
Dehydrin |
21,99 |
| 0U96 |
SGN-E674268 |
1e-90 |
mta sah |
21,79 |
| 0U97 |
SGN-E1352075 |
0 |
7-methylxanthine n-methyltransferase |
21,73 |
| 0U98 |
SGN-E1323598 |
0 |
Transcription initiation factor iib |
21,29 |
| 0U99 |
SGN-E1348381 |
1e-151 |
Translation factor |
21,07 |
| 0U100 | SGN-E1322408 | 0 | Beta-glucosidase-like protein | 20,89 |
*The annotation of each sequence was established on the Coffee Genome Database [31].
**No match with any sequence on the Solanaceae Genomic Database.