Table 1.
Number, repeat number and total repeat length of the mono- to hexanucleotide repeats or motifs of microsatellites in the assembled genomic sequences of B. rapa, B. oleracea and B. napus
| Motif |
B. rapa |
B. oleracea |
B. napus |
||||||
|---|---|---|---|---|---|---|---|---|---|
| Number (%) | Repeat number | Total length (%) | Number (%) | Repeat number | Total length (%) | Number (%) | Repeat number | Total length (%) | |
| Mono | 31 258 (22.2) | 12–307 (14.7) | 458 968 (20.1) | 55 433 (24.2) | 3–65 (15.1) | 838 104 (24.1) | 97 128 (23.1) | 12–2545 (15.2) | 147 5939 (22.9) |
| A | 29 536 (20.9) | 12–50 (14.5) | 428 733 (18.7) | 52 021 (22.7) | 3–65 (15.0) | 780 171 (22.5) | 94 281 (22.4) | 12–2545 (15.2) | 1 432 867 (22.2) |
| C | 1722 (1.2) | 12–307 (17.6) | 30 235 (1.3) | 3412 (1.5) | 3–63 (17.0) | 57 933 (1.7) | 2847 (0.7) | 12–83 (15.1) | 43 072 (0.7) |
| Di | 33 885 (24.0) | 6–3644 (11.1) | 751 910 (32.9) | 55 336 (24.1) | 6–82 (8.8) | 968 946 (27.9) | 98 816 (23.5) | 6–5556 (9.1) | 1 789 752 (27.8) |
| AT | 19 697 (14.0) | 6–419 (8.9) | 350 590 (15.3) | 33 315 (14.5) | 6–63 (8.9) | 596 070 (17.2) | 57 070 (13.6) | 6–5556 (8.7) | 996 518 (15.5) |
| AG | 11 683 (8.3) | 6–3644 (15.6) | 364 004 (15.9) | 18 593 (8.1) | 6–44 (8.7) | 322 438 (9.3) | 34 638 (8.2) | 6–1732 (9.9) | 688 124 (10.7) |
| AC | 2490 (1.8) | 6–131 (7.5) | 37 124 (1.6) | 3411 (1.5) | 6–82 (7.4) | 50 220 (1.4) | 7072 (1.7) | 6–92 (7.4) | 104 648 (1.6) |
| CG | 15 (0.0) | 6–8 (6.4) | 192 (0.0) | 17 (0.0) | 6–9 (6.4) | 218 (0.0) | 36 (0.0) | 6–8 (6.4) | 462 (0.0) |
| Tri | 32 387 (23.0) | 4–812 (4.7) | 459 039 (20.1) | 47 716 (20.8) | 4–1710 (4.7) | 670 164 (19.3) | 91 448 (21.7) | 4–1794 (4.7) | 1 277 172 (19.8) |
| AAG | 9796 (6.9) | 4–812 (4.7) | 139 239 (6.1) | 15 322 (6.7) | 4–81 (4.6) | 212 973 (6.1) | 29 395 (7.0) | 4–162 (4.6) | 408 264 (6.3) |
| AAT | 6334 (4.5) | 4–573 (4.9) | 93 240 (4.1) | 9355 (4.1) | 4–1710 (5.2) | 145 056 (4.2) | 17 722 (4.2) | 4–1794 (5.1) | 268 956 (4.2) |
| ATC | 4211 (3.0) | 4–190 (5.0) | 63 213 (2.8) | 6093 (2.7) | 4–81 (4.7) | 85 047 (2.4) | 12 314 (2.9) | 4–119 (4.6) | 170 151 (2.6) |
| AAC | 3637 (2.6) | 4–11 (4.5) | 49 146 (2.1) | 5036 (2.2) | 4–41 (4.4) | 66 705 (1.9) | 10 046 (2.4) | 4–22 (4.5) | 134 592 (2.1) |
| AGG | 3243 (2.3) | 4–179 (4.6) | 45 084 (2.0) | 5425 (2.4) | 4–13 (4.6) | 74 763 (2.2) | 8349 (2.0) | 4–14 (4.6) | 115 494 (1.8) |
| ACC | 2144 (1.5) | 4–9 (4.5) | 28 908 (1.3) | 2788 (1.2) | 4–43 (4.4) | 37 155 (1.1) | 5969 (1.4) | 4–14 (4.4) | 79 137 (1.2) |
| AGC | 1127 (0.8) | 4–11 (4.4) | 15 039 (0.7) | 1390 (0.6) | 4–22 (4.4) | 18 507 (0.5) | 2878 (0.7) | 4–18 (4.4) | 38 379 (0.6) |
| ACT | 674 (0.5) | 4–10 (4.4) | 8874 (0.4) | 818 (0.4) | 4–28 (4.5) | 10 968 (0.3) | 1754 (0.4) | 4–17 (4.4) | 23 265 (0.4) |
| CCG | 626 (0.4) | 4–8 (4.4) | 8220 (0.4) | 799 (0.3) | 4–7 (4.3) | 10 203 (0.3) | 1566 (0.4) | 4–8 (4.3) | 20 139 (0.3) |
| ACG | 595 (0.4) | 4–9 (4.5) | 8076 (0.4) | 690 (0.3) | 4–13 (4.2) | 8787 (0.3) | 1455 (0.3) | 4–10 (4.3) | 18 795 (0.3) |
| Tetra | 29 433 (20.9) | 3–264 (3.2) | 376 668 (16.5) | 48 394 (21.1) | 3–54 (3.1) | 608 452 (17.5) | 91 268 (21.7) | 3–631 (3.1) | 1 148 496 (17.8) |
| AAAT | 11 870 (8.4) | 3–8 (3.2) | 152 776 (6.7) | 18 856 (8.2) | 3–28 (3.1) | 236 560 (6.8) | 33 903 (8.1) | 3–10 (3.1) | 425 080 (6.6) |
| AAAG | 3496 (2.5) | 3–60 (3.2) | 44 608 (1.9) | 5697 (2.5) | 3–36 (3.2) | 72 224 (2.1) | 10 795 (2.6) | 3–13 (3.2) | 136 204 (2.1) |
| AAAC | 3333 (2.4) | 3–8 (3.1) | 41 960 (1.8) | 4723 (2.1) | 3–26 (3.1) | 59 076 (1.7) | 9717 (2.3) | 3–8 (3.1) | 121 768 (1.9) |
| AATT | 2534 (1.8) | 3–6 (3.1) | 31 108 (1.4) | 4088 (1.8) | 3–10 (3.1) | 51 416 (1.5) | 7863 (1.9) | 3–41 (3.1) | 98 224 (1.5) |
| AATC | 1137 (0.8) | 3–8 (3.2) | 14 368 (0.6) | 2956 (1.3) | 3–27 (3.1) | 36 908 (1.1) | 5112 (1.2) | 3–8 (3.1) | 63 884 (1.0) |
| others | 7063 (5.0) | 3–264 (3.3) | 91 848 (4.0) | 12 074 (5.3) | 3–54 (3.2) | 152 268 (4.4) | 23 878 (5.7) | 3–631 (3.2) | 303 336 (4.7) |
| Penta | 9856 (7.0) | 3–114 (3.2) | 156 510 (6.8) | 15 012 (6.5) | 3–40 (3.2) | 241 090 (6.9) | 29 058 (6.9) | 3–28 (3.1) | 457 065 (7.1) |
| AAAAT | 2758 (2.0) | 3–63 (3.1) | 42 920 (1.9) | 4051 (1.8) | 3–18 (3.4) | 67 905 (2.0) | 7617 (1.8) | 3–9 (3.1) | 118 030 (1.8) |
| AACCG | 1000 (0.7) | 3–68 (3.3) | 16 510 (0.7) | 2169 (0.9) | 3–40 (3.2) | 34 645 (1.0) | 3541 (0.8) | 3–7 (3.2) | 56 435 (0.9) |
| AAAAC | 878 (0.6) | 3–7 (3.2) | 13 905 (0.6) | 1186 (0.5) | 3–8 (3.2) | 18 715 (0.5) | 2424 (0.6) | 3–10 (3.2) | 38 280 (0.6) |
| AAAAG | 683 (0.5) | 3–7 (3.1) | 10 675 (0.5) | 1164 (0.5) | 3–14 (3.1) | 18 260 (0.5) | 2351 (0.6) | 3–7 (3.1) | 36 820 (0.6) |
| AAATT | 568 (0.4) | 3–6 (3.1) | 8790 (0.4) | 784 (0.3) | 3–5 (3.1) | 12 030 (0.3) | 1488 (0.4) | 3–7 (3.1) | 23 065 (0.4) |
| AAACC | 490 (0.3) | 3–7 (3.2) | 7850 (0.3) | 713 (0.3) | 3–6 (3.2) | 11 325 (0.3) | 1273 (0.3) | 3–9 (3.2) | 20 290 (0.3) |
| AATAT | 394 (0.3) | 3–6 (3.1) | 6085 (0.3) | 573 (0.2) | 3–6 (3.1) | 8890 (0.3) | 1083 (0.3) | 3–13 (3.1) | 16 905 (0.3) |
| Others | 3085 (2.2) | 3–114 (3.2) | 49 775 (2.2) | 4372 (1.9) | 3–16 (3.2) | 69 320 (2.0) | 9281 (2.2) | 3–28 (3.2) | 147 240 (2.3) |
| Hexa | 4179 (3.0) | 3–102 (3.4) | 85 176 (3.7) | 7498 (3.3) | 3–33 (3.3) | 146 370 (4.2) | 13 273 (3.2) | 3–1579 (3.7) | 295 236 (4.6) |
| AAAAAT | 628 (0.4) | 3–52 (3.2) | 12 000 (0.5) | 987 (0.4) | 3–22 (3.1) | 18 618 (0.5) | 1803 (0.4) | 3–35 (3.1) | 33 972 (0.5) |
| AAAATT | 267 (0.2) | 3–6 (3.0) | 4866 (0.2) | 776 (0.3) | 3–25 (3.1) | 14 376 (0.4) | 1341 (0.3) | 3–154 (3.2) | 25 614 (0.4) |
| AAAAAC | 269 (0.2) | 3–23 (3.3) | 5298 (0.2) | 395 (0.2) | 3–7 (3.2) | 7596 (0.2) | 746 (0.2) | 3–22 (3.3) | 14 562 (0.2) |
| AAAAAG | 175 (0.1) | 3–6 (3.2) | 3330 (0.1) | 357 (0.2) | 3–14 (3.3) | 6966 (0.2) | 644 (0.2) | 3–37 (3.3) | 12 612 (0.2) |
| AAATAT | 150 (0.1) | 3–52 (3.8) | 3390 (0.1) | 246 (0.1) | 3–16 (3.2) | 4704 (0.1) | 436 (0.1) | 3–29 (3.3) | 8562 (0.1) |
| Others | 2690 (1.9) | 3–102 (3.5) | 56 292 (2.5) | 4737 (2.1) | 3–33 (3.3) | 94 110 (2.7) | 8303 (2.0) | 3–1579 (4.0) | 199 914 (3.1) |
| Total | 140 998 (100) | 3–3644 (8.0) | 228 8271 (100) | 229 389 (100) | 3–1710 (7.7) | 347 3126 (100) | 420 991 (100) | 3–5556 (7.7) | 6 443 660 (100) |