Table 3.
Genes and QTLs that are close to SNPs associated with RFI and DMI
| SNP (trait) | Gene | Gene ID a | Dist gene (kb) b | Strand | Dist QTL (Mb) c | QTL ID d | Full gene name (description) |
|---|---|---|---|---|---|---|---|
| rs109784719 (DMI) |
STMN2 |
534991 |
27.4 |
+ |
44.1 |
#4365 |
Stathmin-like 2 |
| rs29024524 (DMI) |
CCDC171 |
538331 |
0 |
- |
12.1 |
#4425 |
Coiled-coil domain containing 171 |
| |
PSIP1 |
282011 |
48.3 |
+ |
|
|
PC4 and SFRS1 interacting protein 1 |
| |
SNAPC3 |
511366 |
89.3 |
- |
|
|
Small nuclear RNA activating comp 3 |
| rs134003539 (DMI) |
ZNF804B |
100295505 |
0 |
+ |
4.5 |
#10584 |
Zinc finger protein 804B |
| rs41660853 (RFI) |
ANXA10 |
505322 |
0 |
+ |
7.1 |
#4353 |
Annexin A10 |
| |
DDX60 |
787280 |
0 |
- |
7.9 |
#5274 |
DEAD (Asp-Glu-Ala-Asp) box polypep 60 |
| rs135777172 (RFI) |
GPR132 |
539146 |
14.8 |
+ |
2.2 |
#4462 |
G protein-coupled receptor 132 |
| |
CDCA4 |
527837 |
40.7 |
- |
|
|
Cell division cycle associated 4 |
| |
AHNAK2 |
527701 |
84.9 |
- |
|
|
AHNAK nucleoprotein 2 |
| BRF1 | 618161 | 93.3 | - | RNA polymerase III transcr init factor 90 |
aIdentification of the gene according to Ensembl genes database 72.
bDistance in kb of SNP for the gene.
cDistance in Mb of SNP for the closer QTL described in trait associated with SNP.
dIdentification of QTL according to the cattle QTLdb database.