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. 2014 Feb 12;15:124. doi: 10.1186/1471-2164-15-124

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Copyright © 2014 Dziewit et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Prophage-like regions and transposable elements within the P. aminophilus JCM 7686 genome. The putative CDSs, colored according to their category, are shown by arrows representing their direction of transcription. (A) Genetic organization and comparison of the prophage-like regions within the P. aminophilus genome. Predicted gene clusters contain lysogeny, replication, structural and lysis-associated phage genes. The gray-shaded areas connect regions of prophages sharing ≥95% nucleotide sequence identity. (B) Genetic organization of the putative gene transfer agent (GTA) region. (C) Genetic organization of the insertion sequences and non-composite transposon Tn3434a of P. aminophilus. The families and names of the identified TEs are shown in the table. Inverted repeats (IRL – left IR; IRR – right IR) flanking ISs are marked by black vertical bars.