Table 1.
Publications containing applications of second generation sequencing in rubber tree transcriptome analysis
| No. | Publication | Year | Sequencing method | Transcriptome type (length and number of reads) |
|---|---|---|---|---|
| 1 |
Xia et al. [55] |
2011 |
PE-RNA-Seq (Illumina) |
Latex and leaf combined; clone RY7-33-97 (12 mil. reads or 1 Gb approx.) |
| 2 |
Pootakham et al. [56] |
2011 |
454 pyrosequencing (Roche) |
Information not available |
| 3 |
Triwitayakorn et al. [57] |
2011 |
454 pyrosequencing (Roche) |
Shoot apical meristem; clone RRIM 600 (2 mil. reads or 676.5 Mb approx.) |
| 4 |
Chow et al. [29] |
2012 |
RNA-Seq (Illumina) |
Latex; clone RRIM 600 (10 mil. reads or 350 Mb approx.) |
| 5 |
Li et al. [58] |
2012 |
PE-RNA-Seq (Illumina) |
Bark; clone RY7-33-97 (30 mil. reads or 3 Gb approx.) |
| 6 |
Duan et al. [59] |
2013 |
454 pyrosequencing (Roche) |
Leaf, bark, latex, root, embryogenic tissues; clone PB 260(0.5 mil. reads or 200 Mb approx. per tissue) |
| 7 | Rahman et al. [60] | 2013 | PE-RNAseq (Illumina); |
Leaf; clone RRIM 600 (4.89 Gb); |
| 454 pyrosequencing (Roche) | Leaf; clone RRIM 600 (1,085 Mb) |
Sequencing depth, tissue types and the tree clones in each project are indicated.