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. 2011 Nov 18;2(4):925–956. doi: 10.3390/genes2040925

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© 2011 by the authors; licensee MDPI, Basel, Switzerland.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/.)

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Structural comparison between RFM_SmelB₀₅₃ and related 3′-UTRs. (a) Consensus secondary structure of RFM_SmelB₀₅₃ and (b) related 3′-UTRs; Base pairs in (a) and (b) are colored according to the Vienna RNA conservation coloring scheme [65]. Colors indicate the number of nucleotide combinations, out of the six possible base pairs, in the underlying alignment that are involved in forming predicted base-pairs (red = 1, yellow = 2, green = 3, cyan = 4, blue = 5, purple = 6). Pale colors are used for the case that some sRNAs do not form a base-pair; (c) Associated proteins of 3′-UTRs. Arrows indicate the orientation of each gene, identical colors indicate homologous genes. Non-colored arrows denote non-homologous genes (genes are not shown to scale).