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. 2011 Aug 2;2(3):516–561. doi: 10.3390/genes2030516

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© 2011 by the authors; licensee MDPI, Basel, Switzerland.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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Analysis of the DA of clusters defined by strong component analysis of sequence similarity networks of human Swiss-Prot sequences. The numbers on the abscissa indicate the number of top-scoring matches included in the analyses (TSS = 1, …. TSS = 7) used to define paralogous clusters. The values of the ordinate show the percent of DA comparisons within clusters where the pairs compared differ in DA. (Since the number of pair-wise comparisons and computational time increased exponentially with the increase of TSS values, the figure shows only data for TSS = 1−TSS = 7).