Table 1.

The 49 genes significantly upregulated in vte2 relative to Col at 48 h of LT treatment.

AGI number	Ma	adj-P.valueb	Bc	Annotated gene functiond
At1g26450	2.62	0.00	11.64	Beta-1,3-glucanase-related
At4g23410	1.53	0.00	10.08	Senescence-associated family protein
At1g68290	2.39	0.00	7.97	Bifunctional nuclease, putative
At5g22860	1.38	0.00	7.04	Serine carboxypeptidase S28 family protein
At3g14570	1.85	0.00	6.88	Glycosyl transferase family 48 protein (glucan synthase like 4, GSL4)
At1g59500	1.58	0.00	6.79	Auxin-responsive GH3 family protein
At3g17690	1.80	0.00	6.74	Cyclic nucleotide-binding transporter 2/CNBT2
At1g74590	1.50	0.00	6.31	Glutathione S-transferase, putative
At4g20320	1.08	0.00	5.80	CTP synthase, putative/UTP-ammonia ligase, putative
At3g22910	1.82	0.00	5.65	Ca-transporting ATPase, plasma membrane-type, putative (ACA13)
At5g13080	1.88	0.00	5.51	WRKY family transcription factor (WRKY75)
At5g47920	1.06	0.00	5.13	Expressed protein
At1g68620	2.08	0.00	4.95	Expressed protein
At1g65500	2.13	0.00	4.84	Expressed protein
At1g76640	2.52	0.00	4.54	Calmodulin-related protein, putative
At2g26020	2.01	0.00	4.40	Plant defensin-fusion protein, putative (PDF1.2b)
At1g74055	1.00	0.00	4.18	Expressed protein
At1g30370	1.60	0.01	3.80	Lipase class 3 family protein
At5g13880	1.45	0.01	3.60	Expressed protein
At3g49130	0.94	0.01	3.16	Hypothetical protein
At5g46590	1.31	0.01	3.09	No apical meristem (NAM) family protein
At3g21780	0.91	0.01	3.09	UDP-glucosyl transferase family protein
At1g17180	1.21	0.02	2.82	Glutathione S-transferase, putative
At1g65610	1.33	0.02	2.70	Endo−1,4-beta-glucanase, putative/cellulase, putative
At3g53600	0.70	0.02	2.39	Zinc finger (C2H2 type) family protein
At5g13170	1.01	0.02	2.37	Nodulin MtN3 family protein
At5g46350	1.02	0.02	2.34	WRKY family transcription factor (WRKY8)
At5g09470	0.93	0.02	2.26	Mitochondrial substrate carrier family protein
At4g35730	1.24	0.02	2.23	Expressed protein
At2g29090	1.07	0.03	2.15	Cytochrome P450 family protein
At2g30550	0.70	0.03	2.08	Lipase class 3 family protein
At4g38420	1.58	0.03	2.02	Multi-copper oxidase type I family protein
At4g27260	0.76	0.03	1.98	Auxin-responsive GH3 family protein
At3g59100	1.04	0.03	1.81	Glycosyl transferase family 48 protein (glucan synthase like 11, GSL11)
At4g19460	0.80	0.03	1.80	Glycosyl transferase family 1 protein
At3g09270	2.07	0.03	1.73	Glutathione S-transferase, putative
At5g22570	1.18	0.03	1.72	WRKY family transcription factor (WRKY38)
At1g32350	1.45	0.04	1.64	Alternative oxidase, putative
At5g17330	0.74	0.04	1.54	Glutamate decarboxylase 1 (GAD 1)
At4g28550	1.05	0.04	1.43	RabGAP/TBC domain-containing protein
At5g65600	1.27	0.04	1.38	Legume lectin family protein/protein kinase family protein
At4g36430	0.79	0.04	1.37	Peroxidase, putative
At5g04080	0.63	0.04	1.32	Expressed protein
At5g64905	1.78	0.04	1.25	Expressed protein
At5g66920	1.09	0.04	1.24	Multi-copper oxidase type I family protein
At5g63970	0.97	0.05	1.20	Copine-related
At2g23270	0.95	0.05	1.20	Expressed protein
At1g19250	0.86	0.05	1.10	Flavin-containing monooxygenase family protein
At5g67080	1.69	0.05	1.08	Protein kinase family protein

^aM-value (M) is the value of the contrast and represents a log₂ fold change between 48 h-LT-treated vte2 and Col.

^badj-P.value is the p-value adjusted for multiple testing with Benjamini and Hochberg's method to control the false discovery rate.

^cB-statistic (B) is the log-odds that the gene is differentially expressed.

^dAnnotation was obtained from the Gene Ontology of The Arabidopsis Information Resources.