Table 2.
The 28 genes significantly downregulated in vte2 relative to Col at 48 h of LT treatment.
| AGI number | Ma | adj-P.valueb | Bc | Annotated gene functiond |
|---|---|---|---|---|
| At2g18950 | −2.36 | 0.00 | 7.93 | HPT: tocopherol phytyltransferase |
| At5g14740 | −0.77 | 0.00 | 6.32 | Carbonate dehydratase 2 (CA2) (CA18) |
| At3g11930 | −1.47 | 0.00 | 6.10 | Universal stress protein (USP) family protein |
| At2g36830 | −1.01 | 0.00 | 5.94 | Major intrinsic family protein/MIP family protein |
| At1g04680 | −0.74 | 0.00 | 5.41 | Pectate lyase family protein |
| At1g76800 | −1.43 | 0.00 | 5.36 | Nodulin, putative |
| At4g08300 | −2.98 | 0.00 | 4.58 | Nodulin MtN21 family protein |
| At2g22330 | −1.67 | 0.00 | 4.44 | Cytochrome P450, putative |
| At3g10080 | −0.72 | 0.01 | 3.86 | Germin-like protein, putative |
| At5g44720 | −1.05 | 0.02 | 2.89 | Molybdenum cofactor sulfurase family protein |
| At5g23020 | −3.81 | 0.02 | 2.88 | 2-isopropylmalate synthase 2 (IMS2) |
| At3g47470 | −0.84 | 0.02 | 2.77 | Chlorophyll A-B binding protein 4, chloroplast/LHCI type III CAB-4 (CAB4) |
| At1g51400 | −0.88 | 0.02 | 2.61 | Photosystem II 5 kD protein |
| At4g08290 | −1.22 | 0.02 | 2.56 | Nodulin MtN21 family protein |
| At1g21440 | −1.17 | 0.03 | 2.18 | Mutase family protein |
| At1g01620 | −0.83 | 0.03 | 2.02 | Plasma membrane intrinsic protein 1C (PIP1C)/aquaporin PIP1.3 (PIP1.3)/transmembrane protein B (TMPB) |
| At3g08940 | −0.82 | 0.03 | 1.95 | Chlorophyll A-B binding protein (LHCB4.2) |
| At5g24490 | −1.22 | 0.03 | 1.91 | 30S ribosomal protein, putative |
| At4g04830 | −1.57 | 0.04 | 1.58 | Methionine sulfoxide reductase domain-containing protein |
| At2g37460 | −1.93 | 0.04 | 1.54 | Nodulin MtN21 family protein |
| At4g04040 | −0.69 | 0.04 | 1.44 | Pyrophosphate–fructose-6-phosphate 1-phosphotransferase beta subunit, putative |
| At1g31180 | −0.85 | 0.04 | 1.41 | 3-isopropylmalate dehydrogenase, chloroplast, putative |
| At1g78370 | −1.07 | 0.04 | 1.40 | Glutathione S-transferase, putative |
| At5g02260 | −1.23 | 0.04 | 1.38 | Expansin, putative (EXP9) |
| At5g67070 | −0.51 | 0.04 | 1.28 | Rapid alkalinization factor (RALF) family protein |
| At1g13280 | −0.94 | 0.04 | 1.26 | Allene oxide cyclase family protein |
| At3g09580 | −0.73 | 0.05 | 1.08 | Amine oxidase family protein |
| At1g03600 | −0.48 | 0.05 | 1.08 | Photosystem II family protein |
a
M-value (M) is the value of the contrast and represents a log2 fold change between 48 h-LT-treated vte2 and Col.
b
adj-P.value is the p-value adjusted for multiple testing with Benjamini and Hochberg's method to control the false discovery rate.
c
B-statistic (B) is the log-odds that the gene is differentially expressed.
d
Annotation was obtained from the Gene Ontology of The Arabidopsis Information Resources.