Table 3.
The 12 genes that are common between the 77 significantly different genes in 48 h-LT-treated vte2 plant and 744 significantly different genes in 3-d-old vte2 seedling.
| AGI number | 48 h-LT-treated vte2 plant | 3-day-old vte2 seedling | Gene titlec | GO molecular functionc | GO cellular componentc | ||
|---|---|---|---|---|---|---|---|
| Ma | adj-P.valueb | Ma | adj-P.valueb | ||||
| At1g68290 | 2.39 | 0.00 | 2.01 | 0.00 | Bifunctional nuclease, putative | Nucleic acid binding/endonuclease activity | Endomembrane system |
| At1g65500 | 2.13 | 0.00 | 4.33 | 0.00 | Expressed protein | – | Endomembrane system |
| At1g74590 | 1.50 | 0.00 | 2.19 | 0.00 | Glutathione S-transferase | Glutathione transferase activity | Cytoplasm |
| At5g46590 | 1.31 | 0.01 | 1.93 | 0.00 | No apical meristem (NAM) family protein | Transcription factor activity/DNA binding | – |
| At1g17180 | 1.21 | 0.02 | 1.93 | 0.03 | Glutathione S-transferase | Glutathione transferase activity | Cytoplasm |
| At5g46350 | 1.02 | 0.02 | 1.69 | 0.00 | WRKY family transcription factor (WRKY8) | Transcription factor activity/DNA binding | Nucleus |
| At3g09270 | 2.07 | 0.03 | 1.29 | 0.02 | Glutathione S-transferase | Glutathione transferase activity | Cytoplasm |
| At2g30550 | 0.07 | 0.03 | 1.02 | 0.05 | Lipase class 3 family protein | Triacylglycerol lipase activity | Chloroplast |
| At4g36430 | 0.79 | 0.04 | 3.20 | 0.00 | Peroxidase, putative | Peroxidase activity/calcium ion binding/oxidoreductase activity | Endomembrane system |
| At5g64905 | 1.78 | 0.04 | 1.10 | 0.01 | Expressed protein | – | – |
| At1g76800 | −1.43 | 0.00 | −0.74 | 0.02 | Nodulin, putative | – | – |
| At3g09580 | −0.73 | 0.05 | −0.90 | 0.02 | Amine oxidase family protein | Oxidoreductase activity | Chloroplast |
M-value (M) is the value of the contrast and represents a log2 fold change.
adj-P.value, the p-value adjusted for multiple testing with Benjamini and Hochberg's method to control the false discovery rate, were shown for 48 h-LT-treated vte2 plant and 3-d-old vte2 seedling, respectively.
Descriptions of gene function and cellular component were obtained from the Gene Ontology section of The Arabidopsis Information Resources.
Expression profiles of 0-day and 3-day-old seedling of Col and vte2 were subjected to the same process of limma analysis for analysis of significant genes in 48 h-LT-treated vte2 plants (see Materials and Methods). The list of 744 differentially expressed genes in 3-day-old vte2 seedlings was compared with the list of 77 differentially expressed genes in 48 h-LT-treated vte2 plants and overlapping 12 genes were listed.