Table 3.
Primers for specific and long-distance PCR
| PCR | Gene | HAdV species |
1
st
-round primer (5′-3′) |
2
nd
-round primer (5′-3′) |
3
rd
-round primer (5′-3′) |
Annealing temp. (C°) | Fragment size | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Sense | Anti-sense | Sense | Anti-sense | Sense | Anti-sense | |||||
| Generic PCR |
Hexon |
HAdV-D |
AAGGCCGTCA |
GTGCGGCTGG |
ACAACTCGGGCTTCACCGGC |
GGCTGGTGCA |
None |
None |
63 |
322 bp |
| CCCTGCCCTT |
TGCACTCTGA |
CTCTGACCACG |
||||||||
| Long distance PCR |
PVII-Hexon |
HAdV-D |
CGCCCAGCAA |
GTGCGGCTGG |
GGCAGGACTCGCAGACGAGC |
GGTGGGCTCA |
GCGCGGAAAC |
GGGATGCGCC |
60 |
4.8 kb |
| TAACACCGGC | TGCACTCTGA | TCCATGGGGT | GTGTACTGGGT | ACATGACCCT | ||||||