Table 5.
Genes possibly acquired through gene flow by C. coli 76339
| Locus tag | RAST annotation | Present in | Missing in |
|---|---|---|---|
| BN865_01630 |
Methyl-accepting chemotaxis signal transduction protein |
C1a; C1b |
C1c; C2 |
| BN865_02140 |
Methyl-accepting chemotaxis signal transduction protein |
C1a; C2 |
C1b; C1c |
| BN865_02630c |
Methyl-accepting chemotaxis signal transduction protein |
C1a |
C1b; C1c; C2 |
| BN865_02680c |
McrBC restriction endonuclease system, McrB subunit, putative |
C2 |
C1a; C1b; C1c |
| BN865_03910 |
Conserved hypothetical secreted protein |
C2 |
C1a; C1b; C1c |
| BN865_04310c |
FIG 00470070: hypothetical protein |
C1a |
C1b; C1c; C2 |
| BN865_05840c |
Methyl-accepting chemotaxis signal transduction protein, fragment |
C1a |
C1b; C1c; C2 |
| BN865_05850c |
Methyl-accepting chemotaxis signal transduction protein, fragment |
C1a |
C1b; C1c; C2 |
| BN865_06160 |
Hypothetical protein |
C1a; C2 |
C1b; C1c |
| BN865_06170 |
Hypothetical protein |
C1a; C2 |
C1b; C1c |
| BN865_06850c |
Beta-1,3-glucosyltransferase |
C1a; C2 |
C1b; C1c |
| BN865_07080 |
Hypothetical protein |
C1a |
C1b; C1c; C2 |
| BN865_07090 |
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
C1a |
C1b; C1c; C2 |
| BN865_07100 |
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
C1a |
C1b; C1c; C2 |
| BN865_07110 |
NAD-dependent epimerase/dehydratase |
C1a |
C1b; C1c; C2 |
| BN865_07120 |
Putative cyclase superfamily |
C1a |
C1b; C1c; C2 |
| BN865_07130 |
Conserved hypothetical protein 22 |
C1a |
C1b; C1c; C2 |
| BN865_07140 |
Hydrolase, haloacid dehalogenase-like family |
C1a |
C1b; C1c; C2 |
| BN865_07150 |
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase (EC 2.4.99.-) |
C1a |
C1b; C1c; C2 |
| BN865_07160 |
FIG 00470714: hypothetical protein |
C1a |
C1b; C1c; C2 |
| BN865_07180 |
Haloacid dehalogenase-like hydrolase domain/phosphoribulokinase domain protein |
C1a |
C1b; C1c; C2 |
| BN865_07190 |
Capsular polysaccharide biosynthesis protein, putative |
C1a |
C1b; C1c; C2 |
| BN865_07200 |
Capsular polysaccharide biosynthesis protein, putative |
C1a |
C1b; C1c; C2 |
| BN865_08140c |
Methionyl-tRNA formyltransferase (EC 2.1.2.9) |
C1a |
C1b; C1c; C2 |
| BN865_10680c |
Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-)/Dihydropteridine reductase (EC 1.5.1.34) |
C1a; C1b; C1c; C2 |
- |
| BN865_10830 |
Hypothetical protein |
C2 |
C1a; C1b; C1c |
| BN865_14240 |
Possible sugar transferase |
C1a |
C1b; C1c; C2 |
| BN865_14270 |
Methyltransferase (EC 2.1.1.-), possibly involved in O-methyl phosphoramidate capsule modification |
C1a; C1b |
C1c; C2 |
| BN865_14740 | Family of unknown function (DUF450) family | C1a | C1b; C1c; C2 |
The genes listed here were absent in other clade 3 strains, but present in C. coli clades 1 or 2.