Table 2.
H. influenzae | H. aegyptius | H. haemolyticus | H. parainfluenzae | ||||
---|---|---|---|---|---|---|---|
Strain | KR494 | 10810 | RD Kw20 | 3655 | ATCC 11116 | M21639 | ATCC 33392 |
Serotype | f | b | d | nontypeable | - | - | - |
GenBank accession | CP005967 | NC_016809 | NC_000907 | AAZF01000000 | AFBC00000000 | AFQR01000000 | AEWU01000000 |
Length (bp) | 1856176 | 1981535 | 1830138 | 1878368 | 1915025 | 2328161 | 2110314 |
Whole genome GC content (%) | 38.05 | 38.14 | 38.15 | 38.02 | 38.08 | 38.59 | 39.18 |
Genes GC content (%) | 38.68 | 38.76 | 38.83 | 38.75 | 39.00 | 39.33 | 39.83 |
Coding content (%) | 88.54 | 87.29 | 84.66 | 89.38 | 90.07 | 74.29 | 91.59 |
Genes avg. length (bp) | 913 | 910.79 | 935.59 | 870.79 | 856 | 887.6 | 962.55 |
Total CDS number | 1742 | 1903 | 1657 | 1929 | 2020 | 2224 | 2010 |
Strain-specific CDS a | - | 408 | 199 | 448 | 553 | 773 | 644 |
Common CDS b | - | 1495 | 1458 | 1481 | 1487 | 1451 | 1366 |
Unique CDS in Hif KR494 as compared to the other strains c | - | 247 | 284 | 261 | 255 | 292 | 376 |
aCDS number of each strain or species that was less conserved (protein sequence <85% similarity) or absent in the Hif KR494 genome.
bCDS number of each strain or species that was conserved and homologous to the Hif KR494 genome (protein sequence ≥85% similarity).
cNumber of CDS in Hif KR494 that were less conserved or absent as compared to the reference genomes (protein sequence <85% similarity).