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Average allelic imputation error rate (%) for each of 20 classes of allele frequency. Results are presented for four combinations of method (A, B or C) and dataset (1 or 2); method A: combination of Beagle 2.1.3 and DAGPHASE with scale and shift parameters equal to 2.0 and 0.1; method B: same as method A, but with scale and shift parameters equal to 1.0 and 0.0; method C: Beagle version 3.3.0; dataset 1: 548 HD-genotyped animals; dataset 2: 1289 HD-genotyped animals.
