Table 1.
Number and type of animals in each of the three analyzed datasets
|
Dataset |
HD reference |
Additional 50 k genotypes (males) |
Validation animals (males) |
Imputation method applied |
||||
|---|---|---|---|---|---|---|---|---|
| |
Males |
Females |
|
|
A |
B |
C |
D |
| |
|
|
|
|
Beagle 2.1.3/DAGPHASE |
Beagle 2.1.3/DAGPHASE |
Beagle 3.3.0 |
DAGPHASE |
| scale 2.0, shift 0.1 | scale 1.0, shift 0.0 | |||||||
| Dataset 1 |
488 |
0 |
0 |
60 |
Yes |
Yes |
Yes |
Yes |
| Dataset 2 |
898 |
331 |
0 |
60 |
No |
No |
Yes |
No |
| Dataset 3 | 488 | 0 | 2200 | 60 | Yes | No | Yes | No |