Table 3.
Top ranked transcription factors that are regulated in rice by temperature.
| Rank | Pathway | Pathway annotation | Pathway size | Observed | Ratio | P value |
|---|---|---|---|---|---|---|
| 1 | Rice transcription factor: WRKY | rice:TF:WRKY | 107 | 15 | 0.14 | 4.9E − 08 |
| 2 | Rice transcription factor: NAC | rice:TF:NAC | 124 | 12 | 0.096 | 4.5E − 05 |
| 3 | Rice transcription factor: AP2-EREBP | rice:TF:AP2-EREBP | 169 | 14 | 0.082 | 5.9E − 05 |
| 4 | Rice transcription factor: orphans | rice:TF:orphans | 85 | 9 | 0.105 | 0.00019 |
| 5 | Rice transcription factor: bZIP | rice:TF:bZIP | 95 | 9 | 0.095 | 0.00043 |
| 6 | Rice transcription factor: MYB | rice:TF:MYB | 128 | 10 | 0.078 | 0.00092 |
| 7 | Rice transcription factor: tify | rice:TF:tify | 21 | 4 | 0.190 | 0.00140 |
| 8 | Rice transcription factor: MYB-related | rice:TF:MYB-related | 100 | 7 | 0.07 | 0.00835 |
| 9 | Rice transcription factor: C2H2 | rice:TF:C2H2 | 104 | 7 | 0.067 | 0.01004 |
| 10 | Rice transcription factor: pseudo ARR-B | rice:TF:pseudo_ARR-B | 9 | 2 | 0.222 | 0.01811 |
| 11 | Rice transcription factor: G2-like | rice:TF:G2-like | 48 | 4 | 0.083 | 0.02342 |
| 12 | Rice transcription factor: WRKY | rice:TF:WRKY | 107 | 15 | 0.140 | 4.95634 |