Table 6. Genes in the core enrichment (i.e. contributing to the maximum enrichment score for the gene set “RESPONSE_TO_STRESS”) from each gene list.
Nic vs. Con-Pf | Con vs. Con-Pf | ||||||||
Gene | Rank in gene list | Gene | Rank in gene list | Gene | Rank in gene list | Gene | Rank in gene list | Gene | Rank in gene list |
FOS | 1 | FOS | 5 | CIB1 | 404 | RELA | 896 | TNFRSF1A | 1440 |
DUSP1 | 8 | DUSP1 | 15 | ATF4 | 437 | SMAD7 | 899 | MT3 | 1478 |
GADD45G | 32 | BTG2 | 32 | TP53I11 | 452 | TGFB1 | 925 | CDO1 | 1532 |
BTG2 | 38 | BCL6 | 45 | DNAJB1 | 463 | EEF1E1 | 1003 | AKR1B1 | 1624 |
PPP1R15A | 50 | GADD45A | 63 | RAD23A | 498 | PRDX6 | 1055 | STIP1 | 1638 |
HSPB1 | 72 | HSPB1 | 78 | DNAJB4 | 499 | ATOX1 | 1059 | UBE2B | 1641 |
PLOD1 | 78 | SCG2 | 80 | DDIT3 | 615 | MSRA | 1068 | MAP4K2 | 1662 |
BCL6 | 99 | PPP1R15A | 85 | CHRNB2 | 683 | AQP9 | 1114 | XRCC4 | 1666 |
PLAT | 178 | GADD45G | 93 | TRIAP1 | 708 | GPX3 | 1166 | EIF2B2 | 1678 |
SMAD7 | 204 | DNAJB5 | 134 | NDUFS8 | 709 | XRCC6BP1 | 1275 | TP73 | 1697 |
SCG2 | 214 | ALKBH1 | 216 | CHRNA4 | 734 | SUMO1 | 1294 | ||
GADD45A | 227 | ALOX5AP | 240 | RTN4RL1 | 806 | NDUFA6 | 1300 | ||
DNAJB5 | 302 | PLAT | 243 | PCBP4 | 871 | GAP43 | 1331 | ||
DDIT3 | 315 | PDLIM1 | 255 | RNF7 | 895 | RPA1 | 1405 |