Table 4. Comparative study of cysteine palmitoylation sites in Yeast proteins. This data is referred as D2ind in the text.
| Protein | Uniprot ID | Uniprot annotation | Experimentally identified sites | IFS-Palm | WAP-Palm | PalmPred |
| TVP18 | A6ZMD0 | – | – | – | – | 78 |
| HIP1 | P06775 | – | 603 | 339, 463 | 339 | – |
| RHO2 | P06781 | 188* | 188 | 188 | – | 188 |
| NUC1 | P08466 | – | – | – | – | – |
| TUB1 | P09733 | – | – | – | – | 14 |
| GPA2 | P10823 | 4 | – | 4 | – | 4 |
| GAP1 | P19145 | – | – | 286 | – | – |
| YCK1 | P23291 | 537#, 538# | – | 537, 538 | – | 537, 538 |
| YCP4 | P25349 | 243* | – | 243 | – | 243 |
| AGP1 | P25376 | 633# | – | 469 | 172, 266 | – |
| SYN8 | P31377 | 238* | 238 | – | – | 238 |
| MLF3 | P32047 | – | – | – | – | 2 |
| SSO1 | P32867 | – | 266 | – | – | 266 |
| SNC2 | P33328 | 94* | 94 | 94 | 94 | 94 |
| YKT6 | P36015 | 196# | – | 196 | – | 196 |
| YKL047W | P36090 | – | – | 516 | – | 516 |
| BAP2 | P38084 | – | 609 | – | – | – |
| VAP1 | P38085 | – | 619 | 318, 412 | – | – |
| YBR016W | P38216 | – | – | 110, 119, 122 | – | 119 |
| TAT2 | P38967 | – | – | 489 | – | – |
| AKR1 | P39010 | – | – | 663 | 533, 667 | 533, 663, 667 |
| MNN1 | P39106 | – | 17 | – | – | – |
| SSO2 | P39926 | – | 270, 274 | – | – | 270 |
| YCK3 | P39962 | 517*, 518*, 519*,520*, 522*, 523*,524* | – | 84, 517, 518,519, 522, 524 | – | 517, 518, 519,520, 522, 523 |
| VAC8 | P39968 | 4*, 5*, 7* | – | 4, 5, 7, 106, 144 | 106 | 4, 5, 7 |
| HEM14 | P40012 | – | – | 104, 435 | – | – |
| LBS6 | P42951 | – | – | 217, 223, 531 | – | 217, 223 |
| MNN11 | P46985 | – | 35 | – | – | – |
| MSE1 | P48525 | – | – | 413 | 502 | 12 |
| GNP1 | P48813 | – | 663 | 193, 312 | 201 | – |
| MNN10 | P50108 | – | 44 | 263, 362 | – | – |
| YGL108C | P53139 | 4* | – | 4 | – | 4 |
| RHO3 | Q00245 | – | 5 | – | 130 | 5 |
| MEH1 | Q02205 | 7 *, 8* | – | 7, 8 | – | 7, 8 |
| TLG1 | Q03322 | 205*, 206* | 205, 206 | – | – | 205 |
| YLR326W | Q06170 | – | – | 79, 80, 81 | 80 | 79, 80, 81 |
| SNA4 | Q07549 | 2*, 3*, 5*, 7*, 8* | – | – | – | 2, 3, 5, 7, 34 |
| PSR1 | Q07800 | 9$, 10$ | – | 10 | 10 | 9, 10 |
| YLR001C | Q07895 | – | 780 | 780 | 504 | 780 |
| PSR2 | Q07949 | 9$, 10$ | – | 9, 10 | 10 | 9, 10 |
| TLG2 | Q08144 | – | 317, 325 | – | – | 316 |
| YPL199C | Q08954 | – | – | 235 | – | 233, 235 |
| SAM3 | Q08986 | – | – | 268, 321 | 321 | – |
| YPL236C | Q12003 | 13*, 14*, 15* | – | 14, 15 | 13, 14, 159 | 13, 14, 15 |
| PIN2 | Q12057 | – | 35, 41, 53 | 66, 79, 81,82, 84 | 66, 81, 82 | 53, 66, 79,81, 82, 84 |
| VAM3 | Q12241 | – | 262, 274 | – | – | 262 |
$
, * and # denotes the palmitoylated cysteine respectively annotated as ‘probable’, ‘By similarity’ and ‘potential’ in Uniprot.