Table 1.
Genotyped markers, frequencies of alleles and genotypes, and test for Hardy-Weinberg equilibrium
|
Marker
1
|
Location/characteristic of SNP |
Allele |
Count |
Frequency |
Genotype |
Count |
Frequency |
Test for HWE |
|
|---|---|---|---|---|---|---|---|---|---|
| Lab Id | rs# | P-values | |||||||
| FADS1-01 |
rs136261927 |
Intron |
C |
685 |
0.812 |
CC |
275 |
0.652 |
0.4181 |
| |
|
|
T |
159 |
0.188 |
CT |
135 |
0.320 |
|
| |
|
|
|
|
|
TT |
12 |
0.028 |
|
| FADS1-07 |
rs42187261 |
Exon, synonymous (306Tyr > Tyr) |
C |
349 |
0.428 |
CC |
70 |
0.172 |
0.3695 |
| |
|
T |
467 |
0.572 |
CT |
209 |
0.512 |
|
|
| |
|
|
|
|
|
TT |
129 |
0.316 |
|
| FADS1-08 |
rs41652284 |
Intron |
C |
626 |
0.742 |
CC |
226 |
0.536 |
0.1289 |
| |
|
|
T |
218 |
0.258 |
CT |
174 |
0.412 |
|
| |
|
|
|
|
|
TT |
22 |
0.052 |
|
| FADS2-05 |
rs211263660 |
Intron (splice site) |
C |
523 |
0.612 |
CC |
163 |
0.382 |
0.6135 |
| |
|
|
T |
331 |
0.388 |
CT |
197 |
0.461 |
|
| |
|
|
|
|
|
TT |
67 |
0.157 |
|
| FADS2-14 |
rs211580559 |
Exon, non synonymous (294 Ala > Val) |
C |
517 |
0.597 |
CC |
159 |
0.367 |
0.3746 |
| |
|
T |
349 |
0.403 |
CT |
199 |
0.460 |
|
|
| |
|
|
|
|
|
TT |
75 |
0.173 |
|
| FADS2-19 |
rs210169303 |
3′UTR (microRNA binding site) |
C |
589 |
0.731 |
CC |
219 |
0.543 |
0.3764 |
| |
|
|
T |
217 |
0.269 |
CT |
151 |
0.375 |
|
| |
|
|
|
|
|
TT |
33 |
0.082 |
|
| FADS2-23 |
rs109772589 |
3′UTR |
A |
673 |
0.807 |
AA |
267 |
0.640 |
0.2099 |
| |
|
|
G |
161 |
0.193 |
AG |
139 |
0.333 |
|
| GG | 11 | 0.026 | |||||||
1Lab Id = lab notation of SNPs, rs# = reference SNP ID number.