Table 3.
Bovine specific miRNAs expressed in adipose tissue of all steers
| microRNAs | Chromosome | Cluster | Location | Host gene 1 | miRNA expression | Predicted targets 2 | Seed region 3 |
|---|---|---|---|---|---|---|---|
| bta-miR-2478 |
chr9 |
no |
intergenic |
- |
10.90 ± 0.63 |
116 |
UAUCCCA |
| bta-miR-126-3p |
chr11 |
no |
intronic |
EGFL7 |
7.71 ± 0.63 |
26 |
GUACCGU |
| bta-miR-2305 |
chr13 |
no |
intronic |
RIN2 |
6.09 ± 1.19 |
109 |
GGGGGUG |
| bta-miR-2328-3p |
chr18 |
no |
intronic |
ZNF821 |
5.39 ± 1.22 |
144 |
CCCCCUC |
| bta-miR-1584 |
chr3 |
no |
intronic |
TAGLN2 |
5.13 ± 0.85 |
135 |
UGGGGCU |
| bta-miR-2888 |
chr21 |
no |
intergenic |
- |
4.60 ± 0.98 |
93 |
GUGGGGU |
| bta-miR-199c |
chr19 |
no |
intronic |
NUP88 |
4.01 ± 0.38 |
704 |
ACAGUAG |
| bta-miR-2881 |
chr7 |
no |
intergenic |
- |
3.95 ± 0.88 |
59 |
GGGCGGG |
| bta-miR-2332 |
chr19 |
no |
intronic |
UTP6 |
3.39 ± 0.39 |
392 |
GGUUUAA |
| bta-miR-2412 |
chr3 |
no |
intergenic |
- |
3.34 ± 0.99 |
135 |
UGGGGCU |
| bta-miR-2455 |
chr7 |
no |
intergenic |
- |
3.07 ± 1.14 |
413 |
CUGUGCU |
| bta-miR-2316 |
chr15 |
no |
intergenic |
- |
2.53 ± 0.76 |
8 |
CUCCGGC |
| bta-miR-2374 |
chr22 |
no |
intergenic |
- |
1.98 ± 0.83 |
135 |
UGGGGCU |
| bta-miR-2483 |
chrX |
no |
intergenic |
- |
1.62 ± 1.12 |
381 |
AACAUCU |
| bta-miR-2474 |
chr8 |
no |
intronic |
SHB |
1.61 ± 0.96 |
5 |
ACCGGGC |
| bta-miR-425-5p |
chr22 |
yes |
intergenic |
- |
1.61 ± 0.66 |
74 |
UGACACG |
| bta-miR-2892 |
chr12 |
no |
intergenic |
- |
1.52 ± 0.65 |
3 |
GCGACGG |
| bta-miR-1434 |
chr7 |
no |
intronic |
EEF2 |
1.02 ± 0.57 |
1134 |
AAGAAAU |
| bta-miR-2391 |
chr26 |
no |
intergenic |
- |
0.55 ± 0.40 |
2732 |
AAAAAAA |
| bta-miR-2898 |
chr8 |
no |
intergenic |
- |
0.37 ± 0.50 |
134 |
GGUGGAG |
| bta-miR-2424 |
chr5 |
no |
intronic |
NCAPD2 |
0.29 ± 0.49 |
225 |
GAUCUUU |
| bta-miR-2885 |
chr29 |
no |
intergenic |
- |
0.20 ± 0.34 |
27 |
GGCGGCA |
| bta-miR-2882 | chr7 | no | exonic | SMARCA4 | 0.15 ± 0.23 | 19 | GCCCGGG |
1EGF-like-domain, multiple 7 (EGFL7), Ras and Rab interactor 2 (RIN2), zinc finger protein 821 (ZNF821), transgelin 2 (TAGLN2), nucleoporin 88 kDa (NUP88), UTP6, small subunit (SSU) processome component, homolog (yeast) (UTP6), Src homology 2 domain containing adaptor protein B (SHB), eukaryotic translation elongation factor 2 (EEF2), uncharacterized LOC509171 (NCAPD2), SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 (SMARCA4).
2The amount of targets by miRNA is based on TargetScan prediction tool release 6.2.
3Includes 7 nucleotides at positions 2–8 starting at the 5′end of the mature miRNA sequence.