Table 5.
Dinucleotide step parameters values for RY steps in RNA helices
| Step |
Dataset (n) |
Tilt | Roll | Twist | Shift | Slide | Rise | Prop.av | Cup | Zp |
|---|---|---|---|---|---|---|---|---|---|---|
| AC/GU |
free-RNA |
0.6 |
6.0 |
31.8 |
0.2 |
-1.3 |
3.2 |
-13.4 |
6.0 |
2.2 |
| |
(96) |
(1.9) |
(3.4) |
(2.8) |
(0.5) |
(0.3) |
(0.1) |
(4.9) |
(6.3) |
(0.2) |
| |
non-cont |
0.9 |
5.3 |
31.5 |
0.2 |
-1.3 |
3.2 |
-12.2 |
7.3 |
2.2 |
| (76) |
(2.4) |
(4.9) |
(3.0) |
(0.5) |
(0.5) |
(0.1) |
(6.0) |
(8.1) |
(0.4) |
|
| |
cont |
0.6 |
4.5 |
31.9 |
0.2 |
-1.4 |
3.2 |
-10.3 |
7.6 |
2.3 |
| (143) |
(2.4) |
(4.6) |
(3.1) |
(0.5) |
(0.5) |
(0.1) |
(5.7) |
(9.7) |
(0.4) |
|
| AU/AU |
free-RNA |
0.3 |
10.2 |
31.0 |
0.1 |
-1.1 |
3.2 |
-17.4 |
4.0 |
1.9 |
| |
(20) |
(0.9) |
(4.6) |
(2.1) |
(0.2) |
(0.3) |
(0.1) |
(3.9) |
(7.0) |
(0.2) |
| |
non-cont |
-0.3 |
9.7 |
32.5 |
-0.0 |
-1.2 |
3.2 |
-13.8 |
8.8 |
2.0 |
| (18) |
(2.8) |
(7.8) |
(2.9) |
(0.4) |
(0.3) |
(0.1) |
(4.3) |
(11.1) |
(0.3) |
|
| |
cont |
-0.2 |
6.6 |
31.9 |
0.0 |
-1.3 |
3.2 |
-12.4 |
5.1 |
2.2 |
| (38) |
(1.8) |
(5.0) |
(2.7) |
(0.4) |
(0.5) |
(0.1) |
(5.3) |
(6.2) |
(0.3) |
|
| GC/GC |
free-RNA |
0.1 |
3.9 |
31.2 |
0.0 |
-1.5 |
3.2 |
-10.8 |
7.3 |
2.4 |
| |
(94) |
(1.8) |
(3.3) |
(2.9) |
(0.5) |
(0.4) |
(0.1) |
(4.5) |
(5.5) |
(0.2) |
| |
non-cont |
0.0 |
3.6 |
31.7 |
-0.2 |
-1.5 |
3.2 |
-9.0 |
6.9 |
2.4 |
| (100) |
(2.2) |
(5.0) |
(3.0) |
(0.5) |
(0.5) |
(0.1) |
(5.7) |
(8.5) |
(0.4) |
|
| |
cont |
-0.2 |
3.2 |
31.6 |
-0.2 |
-1.6 |
3.2 |
-8.2 |
5.6 |
2.5 |
| (174) |
(2.4) |
(4.2) |
(3.2) |
(0.5) |
(0.5) |
(0.1) |
(6.2) |
(8.9) |
(0.3) |
|
| RY |
free-RNA |
0.3 |
5.5 |
31.4 |
0.1 |
-1.4 |
3.2 |
-12.6 |
6.4 |
2.2 |
| |
(210) |
(1.8) |
(3.9) |
(2.8) |
(0.5) |
(0.4) |
(0.1) |
(5.0) |
(6.1) |
(0.3) |
| |
non-cont |
0.3 |
4.8 |
31.7 |
0.1 |
-1.4 |
3.2 |
-10.7 |
7.2 |
2.3 |
| (194) |
(2.4) |
(5.5) |
(3.0) |
(0.5) |
(0.5) |
(0.1) |
(6.0) |
(8.6) |
(0.4) |
|
| |
cont |
0.1 |
4.1 |
31.8 |
0.0 |
-1.5 |
3.2 |
-9.5 |
6.3 |
2.4 |
| (355) |
(2.4) |
(4.6) |
(3.1) |
(0.5) |
(0.5) |
(0.1) |
(6.1) |
(9.0) |
(0.4) |
|
| ModelRNA | -0.4 | 13.1 | 30.0 | 0.0 | -1.2 | 3.3 | -10.4 | 0.0 | 2.2 |
Mean values and SD of dinucleotide step parameters for RY steps along with average propeller-twist (Prop.av), Cup and Zp in free-RNA, non-cont and cont datasets. Other details are same as in Table 4.