Table 2. Allelic heterogeneity at the AGXT2 locus.
Locus | CoLaus | TasteSensomics | |||||||||||||
Chr | Position | Feature | SNP | PC | xC | R2 | R2diff | model P | Feature | SNP | PT | xT | R2 | R2diff | model P |
5 | 34,537,671–35,578,717 | 1.2025 | rs37370 | 2.1×10−37 | 0.95 | 0.278 | 0.079 | 2.0×10−4 | 1.204 | rs37370 | 2.2×10−21 | 0.92 | 0.130 | 0.047 | 2.0×10−4 |
rs7717823 | 1.1×10−20 | −0.47 | rs455423 | 5.9×10−8 | −0.41 | ||||||||||
rs6880595 | 5.1×10−4 | 0.18 | |||||||||||||
5 | 34,537,671–35,578,717 | 3.0975 | rs37369 | 3.6×10−16 | 0.78 | 0.115 | 0.023 | 2.2×10−3 | 3.096 | rs37370 | 6.6×10−12 | 0.68 | 0.097 | 0.026 | 6.2×10−3 |
rs7717823 | 3.5×10−6 | −0.25 | rs455423 | 1.0×10−4 | −0.31 |
Abbreviations: PC, PT – P-values, xC, xT – multivariate effect sizes, R2 – explained variance of full model, R2diff – additional explained variance of full model compared to best single SNP association, model P – probability of observing same or equal R2diff increase with the same stepwise model selection for 2,500 permuted phenotypes.