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. 2014 Feb 20;10(2):e1003480. doi: 10.1371/journal.pcbi.1003480

Figure 3. Pie maps of 2,457 European individuals from 23 sampling subpopulations from across Europe analysed at 133,363 Linkage Disequilibrium (LD) pruned SNPs according to their genetic relationships using: Classical Multidimensional Scaling (MDS) + Mclust analysis using the D distance matrix based on the T1 (Genotype) statistic; MDS + Mclust analysis using the distance matrix with the transformed V matrix; SPA + Mclust analysis using the original genotype data; GemTools analysis using the original genotype data; genetic algorithm + AMOVA using the original D matrix; genetic algorithm + AMOVA using the V matrix.

Figure 3