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. 2014 Jan 23;15:61. doi: 10.1186/1471-2164-15-61

Table 1.

Summary of alignment statistics of RNA-Seq in H3 and S1

  H3   S1  
Total reads
6990973
 
7502922
 
Total mapped reads
4396449
62.89%
4652862
62.01%
Perfect match
2440840
34.91%
2564012
34.17%
< = 2 bp mismatch
1955609
27.97%
2088850
27.84%
unique match
3922411
56.11%
4106692
54.73%
Mapped genes 27653   28065