Table 2.
Pathway enrichment analysis of DEGs
| KEGG a pathway | DEGs with pathway annotation (2333) | All genes with pathway annotation (30493) | Qvalue b |
|---|---|---|---|
| Linoleic acid metabolism |
17 (0.73%) |
46 (0.15%) |
2.396666e-06 |
| Biosynthesis of secondary metabolites |
389 (16.67%) |
3987 (13.08%) |
6.888993e-06 |
| Metabolic pathways |
681 (29.19%) |
7643 (25.06%) |
4.918936e-05 |
| Glycolysis/Gluconeogenesis |
63 (2.7%) |
446 (1.46%) |
4.918936e-05 |
| Flavonoid biosynthesis |
52 (2.23%) |
345 (1.13%) |
4.918936e-05 |
| alpha-Linolenic acid metabolism |
38 (1.63%) |
227 (0.74%) |
7.964526e-05 |
| Circadian rhythm - plant |
48 (2.06%) |
351 (1.15%) |
1.109326e-03 |
| Glucosinolate biosynthesis |
22 (0.94%) |
127 (0.42%) |
3.626965e-03 |
| Carbon fixation in photosynthetic organisms |
45 (1.93%) |
346 (1.13%) |
4.489689e-03 |
| Valine, leucine and isoleucine degradation |
29 (1.24%) |
194 (0.64%) |
4.707493e-03 |
| Ribosome biogenesis in eukaryotes |
68 (2.91%) |
590 (1.93%) |
5.175354e-03 |
| Arginine and proline metabolism |
37 (1.59%) |
295 (0.97%) |
2.056500e-02 |
| Protein processing in endoplasmic reticulum |
91 (3.9%) |
887 (2.91%) |
2.378769e-02 |
| Glutathione metabolism |
37 (1.59%) |
301 (0.99%) |
2.491330e-02 |
| Glycine, serine and threonine metabolism |
28 (1.2%) |
213 (0.7%) |
2.784337e-02 |
| Starch and sucrose metabolism |
101 (4.33%) |
1025 (3.36%) |
3.905783e-02 |
| Galactose metabolism |
28 (1.2%) |
224 (0.73%) |
4.579364e-02 |
| Zeatin biosynthesis |
27 (1.16%) |
214 (0.7%) |
4.579364e-02 |
| Propanoate metabolism |
22 (0.94%) |
165 (0.54%) |
4.579364e-02 |
| Tropane, piperidine and pyridine alkaloid biosynthesis | 17 (0.73%) | 117 (0.38%) | 4.579364e-02 |
aKEGG = Kyoto Encyclopedia of Genes and Genomes.
bPathways with Qvalue ≤ 0.05 are significantly enriched in DEGs.