Table 3.
Primers used in this article
Primer | Sequence (5′-3′) | Description | Expected size (bp) |
---|---|---|---|
OriTF |
GCCAGCTCGTCGGTGTAGC |
OriT |
700 |
OriTR |
CAACAACGTTGCCCGGATCG |
||
ZF |
TGCACTGCAGCAAGACACTGTGAAGGC |
RepA and its flanking sequences |
2100 |
ZR |
GATTCATTATAACCACGGATCCCTGCCTTTAAGATTTG |
||
EmCFB |
CAAATCTTAAAGGCAGGGATCCGTGGTTATAATGAATC |
EmR in pOriT-4Em |
825 |
EmC |
GGACTAGTGTTAAGGGATGCAGTTTATG |
||
UPF |
ACGCGTCGACGTATGGTGCTGCTGATAACAGC |
Upstream homologous fragment of epsT |
834 |
UPR |
CGCGGATCCCAGTGTGAGTAGCACCTCAC |
||
DnF |
CGGGATCCGTGAAAATGCGTACTAA |
Downstream homologous fragment of epsT |
830 |
DnR |
CATTATAACCACTCTAGACCACTAAAGTTATCG |
||
EmF |
CGATAACTTTAGTGGTCTAGAGTGGTTATAATG |
EmR in pMT |
825 |
EmR |
CTAGCTAGCGTTAAGGGATGCAGTTTATG |
||
sacbF |
CATGCCATGGCACATATACCTGCCGTTCAC |
sacB |
1900 |
sacBR |
CCGGGCCCAATGCCAATAGGATATCGGC |
||
TyzF |
GACGATGAATGGAGTGGTAAGATAG |
Confirmation of the second recombination | 3400a |
TyzR | CTCCAATCATGCTGCCATGTTGC | 2000b |
athe size of the wild type.
bthe size of the deleted mutant.