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. 2014 Feb 21;9(2):e89253. doi: 10.1371/journal.pone.0089253

Table 5. In-silico functional prediction of critical variants of ABCB1 SNPs.

SNP FunctionalCategory Prediction tool Prediction effect FS score
rs1128503 Splicingregulation ESEfinder Not changed 0.407
ESRSearch Changed
PESX Changed
RESCUE ESE Changed
rs2032582 Proteincoding PolyPhen Benign 0.418
SIFT No prediction
SNPeffect Deleterious
LS-SNP Deleterious
SNPs3D Deleterious
Ensembl-NS Nonsynonymous
Splicingregulation ESEfinder Changed
ESRSearch Changed
PESX Not changed
RESCUE ESE Not changed
Posttranslation KinasePhos Not exist
OGPET Exist
Sulfinator Not exist
rs1045642 Proteincoding PolyPhen Benign 0.528
SIFT Tolerated
SNPeffect Benign
LS-SNP Benign
SNPs3D Deleterious
Ensembl-NS Nonsynonymous
Splicingregulation ESEfinder Changed
ESRSearch Changed
PESX Changed
RESCUE ESE Not changed
Posttranslation KinasePhos Not exist
OGPET Not exist

FS Score; Functional significance score.