Table 2.

List of consistently up- and downregulated transcripts (cut off 1.4 fold change)

	Gene	Chromosome	Function	Protein levels	Link to cancer?
1	PLAUR	19	Plasminogen activator, urokinase receptor	4/5	Ovarian and colorectal cancer
2	RAB27B	18	Secretory GTPase	4/4	Breast cancer
3	P4HA2	5	Procollagen-proline	4/6	Metastasis
4	FRY	13	Regulator of actin cytoskeleton	0/3
5	BDKRB1	14	Bradykinine receptor	NA	Breast and lung cancer
6	HOXB5	17	Transcription factor	NA	Leukemia, ovarian carcinoma and others
7	GDF15	19	Growth differentiation factor	1/2	Ovarian and prostate cancer
8	OASL	12	2'-5'-oligoadenylate synthetase-like	NA
9	SERPINE2	2	Serpine protease inhibitor	4/4	Metastasis
10	IFI44	1	Interferon-induced protein 44	NA
11	AMDHD1	12	Protein with amidohydrolase domain	NA
12	TMEM171	5	Transmembrane protein 171	NA
13	GLRX	5	Glutaredoxin	4/4	Pancreatic cancer
14	TMEM169	2	Transmembrane protein 169	NA
15	DMBT1	10	Membrane glycoprotein	NA	Multiple cancers
16	COL13A1	10	Collagen type XIII, alpha1	1/1
17	SH2D1B	1	Signal transduction control	NA
18	MIA		Melanoma inhibitory activity	NA	Neuronal tumors
1	XYLB	3	Xylulokinase homologue	NA
2	LOXL3	2	Lysyl oxidase homologue	NA
3	MYB/NFIB fusion	6	Myb – NFIB fusion	NA
4	EEPD	7	Endonuclease/exonuclease/phosphatase domain containing	NA
5	ARHGEF39	9	Rho guanine nucleotide exchange factor 39	NA

The column “Protein levels” shows how often corresponding changes of the protein levels were identified by Stingele et al. [15] (number of cell lines with altered protein expression/number of cell lines where the protein was quantified; NA – proteomics data not available). The rows 1-18 show upregulated genes; the rows 1- 5 (below) show downregulated genes.