Skip to main content
. 2014 Feb 24;9(2):e88544. doi: 10.1371/journal.pone.0088544

Table 4. Analysis of both determined AGXT2 SNPs with regard to plasma (in µmol/L) and urinary (in µmol/g creatinine) BAIB concentrations.

Plasma BAIB AGXT2 rs16899974 AGXT2 rs37369
WT (c.418 GG) Hetero (c.418 GA) Homo (c.418 AA)
WT (c.1492 GG) 0.92 (0.74–1.13); n = 218 1.43 (1.12–1.83); n = 20 2.51; n = 1 p<0.001
Hetero (c.1492 GT) 1.05 (0.86–1.29); n = 114 1.55 (1.16–1.83); n = 22 2.31 (1.63–2.78); n = 3 p<0.001
Homo (c.1492 TT) 1.08 (0.90–1.60); n = 13 2.03 (1.67–2.39); n = 4 / p = 0.011
p<0.001 p = 0.172 n.d.
Urinary BAIB AGXT2 rs16899974 AGXT2 rs37369
WT (c.418 GG) Hetero (c.418 GA) Homo (c.418 AA)
WT (c.1492 GG) 44.1 (27.9–67.9); n = 218 151 (83.1–230); n = 20 1036; n = 1 p<0.001
Hetero (c.1492 GT) 58.5 (38.6–89.1); n = 116 167 (76.9–251); n = 24 689 (309–1316); n = 3 p<0.001
Homo (c.1492 TT) 111 (51.1–140); n = 13 374 (292–587); n = 5 / p<0.001
p<0.001 p = 0.042 n.d.

Median values (25–75% percentile) are shown. Both SNPs were significant for plasma and urinary BAIB in two-way ANOVA models using log-transformed data. The p values in the last rows and lower columns are based on nested ANOVA tests of log-transformed data (significant if p<0.025).

AGXT2, alanine-glyoxylate aminotransferase 2; BAIB, β-aminoisobutyrate; Hetero, heterozygous for minor allele; Homo, homozygous for minor allele; n.d., not determined; WT (wild-type), homozygous for major allele.