Table 1.
Summary of the networks considered in this study
| Organism (NCBI taxonomy ID) | Nodes (proteins) | Essential nodes | (%) | Edges (interactions) |
|---|---|---|---|---|
| Acinetobacter baylyi (62977) | 2,546 | 468 | (18.4 %) | 12,996 |
| Arabidopsis thaliana (3702) | 7,090 | 195 | (2.8 %) | 69,603 |
| Bacillus subtilis (224308) | 3,347 | 219 | (6.5 %) | 20,728 |
| Caenorhabditis elegans (6239) | 5,184 | 192 | (3.7 %) | 46,737 |
| Escherichia coli (511145) | 3,789 | 672 | (17.7 %) | 25,784 |
| Francisella novicida (401614) | 1,415 | 362 | (25.6 %) | 7,587 |
| Haemophilus influenzae (71421) | 1,497 | 592 | (39.5 %) | 8,877 |
| Helicobacter pylori (85962) | 1,352 | 298 | (22.0 %) | 7,915 |
| Mycobacterium tuberculosis (83332) | 3,295 | 587 | (17.8 %) | 18,445 |
| Mycoplasma genitalium (243273) | 446 | 363 | (81.4 %) | 3,376 |
| Mycoplasma pulmonis (272635) | 616 | 288 | (46.8 %) | 3,111 |
| Pseudomonas aeruginosa (208963) | 4,556 | 296 | (6.5 %) | 21,818 |
| Saccharomyces cerevisiae (4932) | 5,477 | 1,109 | (20.2 %) | 105,429 |
| Salmonella enterica serovar typhi (209261) | 3,491 | 344 | (9.9 %) | 19,650 |
| Salmonella typhimurium (99287) | 3,712 | 204 | (5.5 %) | 20,985 |
| Staphylococcus aureus NCTC (93061) | 2,127 | 328 | (15.4 %) | 9,500 |
| Staphylococcus aureus subsp. aureus N315 (158879) | 1,966 | 296 | (15.1 %) | 9,207 |
| Streptococcus pneumoniae (170187) | 1,718 | 109 | (6.3 %) | 8,597 |
| Streptococcus sanguinis (388919) | 1,801 | 215 | (11.9 %) | 8,315 |
| Vibrio cholerae (243277) | 2,958 | 537 | (18.2 %) | 15,644 |
The table lists the organisms considered in this study along with their NCBI taxonomy ID, the number of nodes (proteins), the number of essential nodes (as obtained from DEG), and the number of high-confidence interactions between the nodes (as obtained from STRING)