Table 2.
Comparison of enrichments between the MKL, ANAT and Steiner tree solutions
| Biological process | MKL | ANAT | Steiner |
|---|---|---|---|
|
Influenza infection
|
|
|
|
| Intracellular receptor mediated |
6.5e-10 |
2.1e-04 |
1.2e-05 |
| signaling pathway (GO:0030522) |
|
|
|
| Apoptosis (GO:0006915) |
3.7e-04 |
1.7e-04 |
3.3e-04 |
| Viral reproduction (GO:0016032) |
2.5e-03 |
>0.01 |
>0.01 |
|
ER export
|
|
|
|
| Vesicle-mediated transport |
1.2e-05 |
7.6e-04 |
8.5e-05 |
| (GO:0016192) |
|
|
|
| Cellular membrane organization |
1.4e-05 |
6.6e-05 |
1.6e-05 |
| (GO:0016044) |
|
|
|
| Intracellular protein transport |
9.2e-06 |
7.8e-06 |
2.3e-05 |
| (GO:0006886) |
This table compares the hypergeometric p-values indicating the significance of the overlap between each of the predicted subnetworks (considering non-input genes only) and the gene sets of GO categories that are of relevance to the investigated biological processes.