Fig. 4.

Analysis of the incorrect genotype calls for non-reference homozygous loci in a single Drosophila inbred line. An allele supported by the highest number of reads at a locus was assumed as the inherited allele. ‘No-calls’ of SAMtools (thin gray) were analyzed together. (A) Proportions of incorrect calls at the loci with several different number of allele candidates. (B) Proportions of incorrect calls at the loci with different lengths of motifs. (C) Proportions of incorrect calls at the loci with different lengths of the highest read frequency allele (assumed as inherited alleles)