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. 2014 Jan 13;65(4):1095–1109. doi: 10.1093/jxb/ert447

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© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 5. — Differentially expressed (DE) genes in virus vs. mock treated plants of cv. Rywal (left) and NahG-Rywal (right) at 1, 3, and 6 d post infection (dpi). (A) Venn diagram of all of the DE genes (bold, upregulated; regular, downregulated). (B) Representation of numbers of DE genes (black, upregulated; grey, downregulated) in the selected functional groups; MapMan ontology bins: photosynthesis (bins 1, 19), carbohydrate metabolism (minor CHO, major CHO, gluconeogenesis; 2, 3, 6), energy (glycolysis, fermentation, OPP, TCA/organic transformation, mitochondrial electron transport/ATP synthesis; 4, 5, 7, 8, 9), signalling (30), hormone metabolism (17), stress (20), secondary metabolism (16), cell wall (10), redox (21), and silencing (27.5).